Motif IL_48444.6 Version IL_48444.6 of this group appears in releases 3.96 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_058 | 7A0S | 0.5123 | 2 | X | LSU rRNA | C | 1514 | U | 1515 | A | 1516 | C | 1517 | * | G | 1503 | G | 1504 | U | 1505 | G | 1508 | ncWW | cWW | cWW | |
| 2 | IL_1MFQ_001 | 1MFQ | 0.2745 | 1 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | cWW | ||
| 3 | IL_1L9A_001 | 1L9A | 0.0000 | 1 | B | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | ncWw | cWW | |
| 4 | IL_6XJQ_002 | 6XJQ | 0.5494 | 1 | A | Self-alkylating ribozyme (58-MER) | C | 48 | G | 49 | A | 50 | U | 51 | * | A | 10 | G | 11 | A | 13 | G | 14 | cWW | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CAGUA | 2 |
| CUAC*GGUCAG | 1 |
| CGAU*AGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGU | 2 |
| UA*GUCA | 1 |
| GA*GAA | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.46 | Max 0.95
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