Motif IL_48554.1 Version IL_48554.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VTW_025 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | C | 846 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW | |
| 2 | IL_3NPQ_006 | 3NPQ | 0.9774 | 2 | A | SAH (S-adenosyl-L-homocysteine) riboswitch aptamer | C | 16 | A | 17 | A | 18 | G | 19 | * | C | 26 | C | 27 | C | 28 | G | 31 | cWW | tHS | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAC*GGUG | 1 |
| CAAG*CCCAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGA*GU | 1 |
| AA*CCAG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: