Motif IL_48723.1 Version IL_48723.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-6 | 4-5 | 4-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2VPL_001 | 2VPL | 0 | 0 | Kink-turn | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGAGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAGAAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48723.1 | Only in the parent motif |
|---|---|---|---|
| IL_19669.1 Compare | IL_2VPL_001 | IL_2VPL_004, IL_2HW8_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_48723.1 | Only in the child motif |
|---|---|---|---|
| IL_93335.2 Compare | IL_2VPL_001 | IL_2VPL_004, IL_1U63_003, IL_2HW8_001, IL_1U63_001 |
- Annotations
-
- Kink-turn (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: