Motif IL_93335.2 Version IL_93335.2 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-6 | 4-5 | 4-11 | 5-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U63_001 | 1U63 | 0.1264 | 0 | B | 49 NT FRAGMENT OF MRNA FOR L1 | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | tSs | cWW | tsS | ||
| 2 | IL_2HW8_001 | 2HW8 | 0.0538 | 0 | Kink-turn | B | 36-MER | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 22 | G | 23 | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | tSH | ntSs | cWW | tsS | ncsS |
| 3 | IL_2VPL_004 | 2VPL | 0.0000 | 0 | D | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS | ncsS | |
| 4 | IL_1U63_003 | 1U63 | 0.4540 | 0 | Kink-turn | D | 49 NT FRAGMENT OF MRNA FOR L1 | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS | |
| 5 | IL_2VPL_001 | 2VPL | 0.4937 | 0 | Kink-turn | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGAGAAAC | 4 |
| GGAG*CGCGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAGAAA | 4 |
| GA*GCGAAA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_93335.2 | Only in the parent motif |
|---|---|---|---|
| IL_93335.1 Compare | IL_2VPL_004, IL_1U63_003, IL_1U63_001, IL_2HW8_001 | IL_2VPL_001 | |
| IL_48723.1 Compare | IL_2VPL_001 | IL_2VPL_004, IL_1U63_003, IL_2HW8_001, IL_1U63_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_93335.2 | Only in the child motif |
|---|---|---|---|
| IL_43946.1 Compare | IL_2HW8_001, IL_2VPL_001, IL_1U63_001 | IL_2VPL_004, IL_1U63_003 |
- Annotations
-
- Kink-turn (3)
- (2)
- Basepair signature
- 12_cWW-tSH-tSS-cWW,tSS-cSS
- Heat map statistics
- Min 0.05 | Avg 0.28 | Max 0.53
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