Motif IL_49111.1 Version IL_49111.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNQ_005 | 3BNQ | 0.6845 | 1 | B+A | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW | |||
| 2 | IL_3BNQ_011 | 3BNQ | 0.6855 | 1 | D+C | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW | |||
| 3 | IL_2QBG_057 | 2QBG | 0.0000 | 1 | B | 23S rRNA | U | 1468 | A | 1469 | A | 1470 | G | 1471 | * | U | 1520 | G | 1521 | A | 1522 | G | 1524 | cWW | tHH | tHS | cWW | |
| 4 | IL_3UXR_043 | 3UXR | 0.4912 | 1 | A | 23S ribosomal RNA | U | 1240 | A | 1241 | A | 1242 | G | 1243 | * | C | 1202 | G | 1203 | A | 1204 | G | 1206 | cWW | ntHW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 2 |
| UAAG*UGAUG | 1 |
| CGAUG*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 2 |
| AA*GAU | 1 |
| GAU*AA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_49111.1 | Only in the parent motif |
|---|---|---|---|
| IL_97736.1 Compare | IL_3BNQ_011, IL_3BNQ_005 | IL_3UXR_043, IL_2QBG_057 | IL_3BNP_003, IL_3BNP_002, IL_2IL9_001 |
| IL_13649.1 Compare | IL_2QBG_057 | IL_3UXR_043, IL_3BNQ_011, IL_3BNQ_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_49111.1 | Only in the child motif |
|---|---|---|---|
| IL_07675.1 Compare | IL_2QBG_057 | IL_3UXR_043, IL_3BNQ_011, IL_3BNQ_005 | |
| IL_78674.1 Compare | IL_3BNQ_005 | IL_3UXR_043, IL_3BNQ_011, IL_2QBG_057 | IL_2QBG_046 |
- Annotations
- Basepair signature
- 08_cWW--tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.44 | Max 0.81
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