Motif IL_78674.1 Version IL_78674.1 of this group appears in releases 0.7 to 0.8

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_2QBG_046	2QBG	0.0000	1	B	23S rRNA	G	1202	U	1203	A	1204	G	1206	*	U	1240	A	1241	U	1242	C	1243	cWW	cwW	ntWW	cWW
2	IL_3BNQ_005	3BNQ	0.8358	1	A+B	A site of human mitochondrial ribosome, A chain	G	15	C	16	A	17	G	19	*	C	7	A	8	C	9	C	10	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAAG*UAUC	1
GCAAG*CACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*AU	1
CAA*AC	1

Release history

Release	0.7	0.8
Date	2013-02-17	2013-02-17
Status	New id, 2 parents	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_78674.1	Only in the parent motif
IL_59016.1 Compare	IL_2QBG_046	IL_3BNQ_005	IL_1QBP_002, IL_165D_001, IL_413D_001, IL_1QBP_005
IL_49111.1 Compare	IL_3BNQ_005	IL_2QBG_046	IL_3UXR_043, IL_3BNQ_011, IL_2QBG_057

Children motifs

Child motif	Common motif instances	Only in IL_78674.1	Only in the child motif
IL_73816.1 Compare	IL_2QBG_046	IL_3BNQ_005	IL_255D_001
IL_86826.1 Compare	IL_3BNQ_005	IL_2QBG_046	IL_2QBG_057, IL_3V2F_043

Annotations: (2)
Basepair signature: cWW-L-R-R-L-cWW
Heat map statistics: Min 0.84 | Avg 0.42 | Max 0.84

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Coloring options: Nucleotide numbers

Motif IL_78674.1 Version IL_78674.1 of this group appears in releases 0.7 to 0.8 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_78674.1 Version IL_78674.1 of this group appears in releases 0.7 to 0.8

Download

Csv

Json