Motif IL_97736.1 Version IL_97736.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNQ_005 | 3BNQ | 0.9316 | 1 | B+A | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW | |
| 2 | IL_3BNQ_011 | 3BNQ | 0.2549 | 1 | D+C | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW | |
| 3 | IL_3BNP_002 | 3BNP | 0.0000 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 13 | C | 14 | A | 15 | G | 17 | cWW | cWW | |
| 4 | IL_2IL9_001 | 2IL9 | 0.1519 | 0 | Tandem non-canonical cWW pairs | A | Ribosomal Binding Domain of the IRES RNA | G | 6079 | U | 6080 | C | 6081 | U | 6082 | * | G | 6110 | G | 6111 | A | 6112 | C | 6113 | cWW | cWW |
| 5 | IL_3BNP_003 | 3BNP | 0.1670 | 1 | B+A | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 14 | C | 15 | A | 16 | G | 18 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 4 |
| GUCU*GGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 4 |
| UC*GA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_97736.1 | Only in the parent motif |
|---|---|---|---|
| IL_13862.1 Compare | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_011, IL_3BNQ_005 | IL_2IL9_001 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_97736.1 | Only in the child motif |
|---|---|---|---|
| IL_78732.2 Compare | IL_3BNP_003, IL_3BNP_002 | IL_3BNQ_011, IL_3BNQ_005, IL_2IL9_001 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 |
| IL_49111.1 Compare | IL_3BNQ_011, IL_3BNQ_005 | IL_3BNP_003, IL_3BNP_002, IL_2IL9_001 | IL_3UXR_043, IL_2QBG_057 |
- Annotations
-
- (4)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.41 | Max 0.96
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