Motif IL_49156.1 Version IL_49156.1 of this group appears in releases 3.3 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_469 | 4V88 | 0.3270 | 1 | Single bulged U | A6 | SSU rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW |
| 2 | IL_4V9F_095 | 4V9F | 0.0000 | 3 | Bulged stacked bases | 0 | LSU rRNA | A | 2746 | G | 2750 | * | U | 2732 | U | 2733 | cWW | cWW |
| 3 | IL_4V8P_221 | 4V8P | 0.8159 | 1 | Single bulged A (H) | D1 | LSU rRNA | U | 1424 | G | 1426 | * | U | 1437 | A | 1438 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*UA | 2 |
| ACGUG*UU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 2 |
| CGU* | 1 |
- Annotations
-
- Single bulged U (1)
- Single bulged A (H) (1)
- Bulged stacked bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.33 | Avg 0.44 | Max 0.85
Coloring options: