#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-82-94-75-6
1 IL_2ZJR_0702ZJR0.46230UAA/GAN with extra pair (H)X LSU rRNAU1870G1871A1872A1873G1874*U1843C1844A1845A1846G1847ncWWntHScWW
2 IL_2ZJR_0482ZJR0.00000X LSU rRNAC1364U1365A1366A1367G1368*C1389G1390A1391U1392G1393cWWtWHtHScWW
3 IL_3F1H_0533F1H0.71300A23S RRNAC1577U1578A1579A1580G1581*C1417G1418A1419U1420G1421cWWtWHtHScWW
4 IL_3F1H_0713F1H0.74600A23S RRNAU1851C1852A1853A1854G1855*C1887G1888A1889A1890G1891cWWntSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAG*UCAAG1
CUAAG*CGAUG1
CGAUG*CUAAG1
UCAAG*CGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*CAA1
UAA*GAU1
GAU*UAA1
CAA*GAA1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_49609.1Only in the child motif
IL_12912.1
Compare
IL_2ZJR_048IL_3F1H_053, IL_2ZJR_070, IL_3F1H_071
IL_52210.1
Compare
IL_2ZJR_070IL_3F1H_053, IL_3F1H_071, IL_2ZJR_048IL_3PYO_026, IL_3O58_143, IL_3PYO_066
Annotations
  • (3)
  • UAA/GAN with extra pair (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.46 | Avg 0.52 | Max 0.85
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.2417 s