Motif IL_49609.1 Version IL_49609.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2ZJR_070 | 2ZJR | 0.4623 | 0 | UAA/GAN with extra pair (H) | X | LSU rRNA | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | * | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | ncWW | ntHS | cWW | ||
2 | IL_2ZJR_048 | 2ZJR | 0.0000 | 0 | X | LSU rRNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | cWW | tWH | tHS | cWW | ||
3 | IL_3F1H_053 | 3F1H | 0.7130 | 0 | A | 23S RRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | U | 1420 | G | 1421 | cWW | tWH | tHS | cWW | ||
4 | IL_3F1H_071 | 3F1H | 0.7460 | 0 | A | 23S RRNA | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | * | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAAG*UCAAG | 1 |
CUAAG*CGAUG | 1 |
CGAUG*CUAAG | 1 |
UCAAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*CAA | 1 |
UAA*GAU | 1 |
GAU*UAA | 1 |
CAA*GAA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_49609.1 | Only in the child motif |
---|---|---|---|
IL_12912.1 Compare | IL_2ZJR_048 | IL_3F1H_053, IL_2ZJR_070, IL_3F1H_071 | |
IL_52210.1 Compare | IL_2ZJR_070 | IL_3F1H_053, IL_3F1H_071, IL_2ZJR_048 | IL_3PYO_026, IL_3O58_143, IL_3PYO_066 |
- Annotations
-
- (3)
- UAA/GAN with extra pair (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.46 | Avg 0.52 | Max 0.85
Coloring options: