Motif IL_49767.1 Version IL_49767.1 of this group appears in releases 3.2 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	3-9	5-8	6-7
1	IL_4V8P_212	4V8P	0.4073		D1	LSU rRNA	G	1193	A	1194	U	1195	A	1196	A	1197	G	1198	*	C	1355	G	1356	A	1357	U	1358	A	1359	C	1360	cWW	cwW	tWH	tHS	cWW
2	IL_5J7L_350	5J7L	0.1956	UAA/GAN with extra cWW	DA	LSU rRNA	G	2737	A	2738	U	2739	A	2740	A	2741	G	2742	*	C	2762	G	2763	A	2764	A	2765	A	2766	C	2767	cWW	cwW	tWH	tHS	cWW
3	IL_4WF9_104	4WF9	0.2024	UAA/GAN with extra cWW	X	LSU rRNA	G	2764	A	2765	U	2766	A	2767	A	2768	G	2769	*	U	2789	G	2790	A	2791	A	2792	G	2793	C	2794	cWW	cWW	tWH	tHS	cWW
4	IL_4V9F_096	4V9F	0.1611	UAA/GAN with extra cWW	0	LSU rRNA	G	2772	G	2773	U	2774	A	2775	A	2776	G	2777	*	C	2797	G	2798	A	2799	A	2800	A	2801	C	2802	cWW	cWW	tWH	tHS	cWW
5	IL_4Y4O_282	4Y4O	0.0000	UAA/GAN with extra cWW (H)	2A	LSU rRNA	G	2737	A	2738	U	2739	A	2740	A	2741	C	2742	*	G	2762	G	2763	A	2764	A	2765	G	2766	C	2767	cWW	cWW	tWH	tHS	cWW
6	IL_4IOA_100	4IOA	0.0768	UAA/GAN with extra cWW (H)	X	LSU rRNA	G	2717	A	2718	U	2719	A	2720	A	2721	C	2722	*	G	2742	G	2743	A	2744	A	2745	G	2746	C	2747	cWW	cWW	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUAAC*GGAAGC	2
GAUAAG*CGAUAC	1
GAUAAG*CGAAAC	1
GAUAAG*UGAAGC	1
GGUAAG*CGAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUAA*GAAG	3
AUAA*GAUA	1
AUAA*GAAA	1
GUAA*GAAA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN with extra cWW (3)
UAA/GAN with extra cWW (H) (2)
(1)
Basepair signature: cWW-cWW-R-tWH-L-tHS-cWW
Heat map statistics: Min 0.08 | Avg 0.21 | Max 0.44

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