Motif IL_49767.1 Version IL_49767.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_212 | 4V8P | 0.4073 | 0 | D1 | LSU rRNA | G | 1193 | A | 1194 | U | 1195 | A | 1196 | A | 1197 | G | 1198 | * | C | 1355 | G | 1356 | A | 1357 | U | 1358 | A | 1359 | C | 1360 | cWW | cwW | tWH | tHS | cWW | |
| 2 | IL_5J7L_350 | 5J7L | 0.1956 | 0 | UAA/GAN with extra cWW | DA | LSU rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | G | 2742 | * | C | 2762 | G | 2763 | A | 2764 | A | 2765 | A | 2766 | C | 2767 | cWW | cwW | tWH | tHS | cWW |
| 3 | IL_4WF9_104 | 4WF9 | 0.2024 | 0 | UAA/GAN with extra cWW | X | LSU rRNA | G | 2764 | A | 2765 | U | 2766 | A | 2767 | A | 2768 | G | 2769 | * | U | 2789 | G | 2790 | A | 2791 | A | 2792 | G | 2793 | C | 2794 | cWW | cWW | tWH | tHS | cWW |
| 4 | IL_4V9F_096 | 4V9F | 0.1611 | 0 | UAA/GAN with extra cWW | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2800 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
| 5 | IL_4Y4O_282 | 4Y4O | 0.0000 | 0 | UAA/GAN with extra cWW (H) | 2A | LSU rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | C | 2742 | * | G | 2762 | G | 2763 | A | 2764 | A | 2765 | G | 2766 | C | 2767 | cWW | cWW | tWH | tHS | cWW |
| 6 | IL_4IOA_100 | 4IOA | 0.0768 | 0 | UAA/GAN with extra cWW (H) | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | A | 2745 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAC*GGAAGC | 2 |
| GAUAAG*CGAUAC | 1 |
| GAUAAG*CGAAAC | 1 |
| GAUAAG*UGAAGC | 1 |
| GGUAAG*CGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAAG | 3 |
| AUAA*GAUA | 1 |
| AUAA*GAAA | 1 |
| GUAA*GAAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN with extra cWW (3)
- UAA/GAN with extra cWW (H) (2)
- (1)
- Basepair signature
- cWW-cWW-R-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.21 | Max 0.44
Coloring options: