Motif IL_50992.1 Version IL_50992.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-14 | 5-12 | 6-11 | 7-10 | 8-9 | 13-14 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_159 | 4V8P | 0.0000 | 0 | 9x8 Sarcin-Ricin; G-bulge | D1 | LSU rRNA | C | 29 | U | 30 | G | 31 | A | 32 | A | 33 | C | 34 | U | 35 | U | 36 | * | A | 43 | U | 44 | C | 45 | A | 46 | G | 47 | U | 48 | A | 49 | A | 50 | G | 51 | cWW | tSH | tHW | tHH | ntHS | cWw | cWW | cSH | |
| 2 | IL_4WF9_008 | 4WF9 | 0.1771 | 0 | 9x8 Sarcin-Ricin; G-bulge | X | LSU rRNA | G | 190 | A | 191 | G | 192 | A | 193 | A | 194 | C | 195 | U | 196 | G | 197 | * | C | 204 | U | 205 | U | 206 | A | 207 | G | 208 | U | 209 | A | 210 | C | 211 | C | 212 | cWW | cWWa | tSH | tHW | tHH | tHS | cWw | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACUU*AUCAGUAAG | 1 |
| GAGAACUG*CUUAGUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACU*UCAGUAA | 1 |
| AGAACU*UUAGUAC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 9x8 Sarcin-Ricin; G-bulge (2)
- Basepair signature
- cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.09 | Max 0.18
Coloring options: