Motif IL_51087.2 Version IL_51087.2 of this group appears in releases 3.48 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | 7-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_102 | 7A0S | 0.5495 | 0 | Major groove platform with intercalation | Y | 5S rRNA | G | 18 | C | 19 | A | 20 | C | 21 | * | G | 66 | C | 67 | A | 68 | G | 69 | C | 70 | cWW | ncWW | ncWW | ncWW | cSH | |
| 2 | IL_1L9A_001 | 1L9A | 0.0000 | 0 | B | signal recognition particle RNA S domain | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | cWW | ncWw | cWW | ||||
| 3 | IL_1MFQ_001 | 1MFQ | 0.2956 | 0 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | cWW | cWW | |||||
| 4 | IL_1J2B_001 | 1J2B | 0.8863 | 0 | C | tRNA(Val) | C | 926 | G | 927 | C | 928 | C | 929 | * | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | cWW | cWW | |||||
| 5 | IL_5TBW_065 | 5TBW | 0.9321 | 1 | Multiple bulged bases with near cWW | 1 | LSU rRNA | G | 1623 | G | 1624 | A | 1625 | U | 1626 | * | G | 1817 | U | 1818 | U | 1819 | U | 1820 | C | 1822 | cWW | ncWW | ncWW | cWW | ||
| 6 | IL_1U6B_004 | 1U6B | 0.9257 | 0 | B | 197-MER | G | 119 | A | 120 | A | 121 | G | 122 | * | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CAGUA | 2 |
| GCAC*GCAGC | 1 |
| CGCC*GGAGG | 1 |
| GGAU*GUUUUC | 1 |
| GAAG*CAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGU | 2 |
| CA*CAG | 1 |
| GC*GAG | 1 |
| GA*UUUU | 1 |
| AA*AAG | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Multiple bulged bases with near cWW (1)
- Major groove platform with intercalation (1)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.30 | Avg 0.67 | Max 0.99
Coloring options: