Motif IL_51479.1 Version IL_51479.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4EYA_010 | 4EYA | 0.8272 | 1 | Tandem non-canonical cWW pairs | m+n | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | G | 9 | cWW | ncwW | ncWW |
| 2 | IL_4EYA_008 | 4EYA | 0.7205 | 1 | Tandem non-canonical cWW pairs | l+k | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | G | 9 | cWW | ncwW | cWW |
| 3 | IL_4WF9_110 | 4WF9 | 0.7274 | 1 | Tandem non-canonical cWW pairs | Y | 5S rRNA | G | 5 | U | 6 | G | 7 | A | 8 | * | U | 107 | G | 108 | C | 110 | cWW | cWW | |
| 4 | IL_8BH9_001 | 8BH9 | 0.8642 | 1 | B | RNA (12-mer) | A | 430 | A | 431 | U | 432 | G | 433 | * | C | 500 | A | 501 | U | 503 | cWW | cWW | ||
| 5 | IL_8CRE_401 | 8CRE | 0.8090 | 1 | CM | SSU rRNA | A | 160 | G | 161 | A | 162 | G | 163 | * | C | 147 | C | 148 | U | 150 | cWW | ncWWa | cWW | |
| 6 | IL_2O3V_003 | 2O3V | 0.1552 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
| 7 | IL_3MEI_004 | 3MEI | 0.1976 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW | |
| 8 | IL_2OE5_002 | 2OE5 | 0.0451 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW | |
| 9 | IL_2OE8_002 | 2OE8 | 0.0000 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW | |
| 10 | IL_2O3Y_003 | 2O3Y | 0.1288 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 4 |
| CUUG*CUUG | 2 |
| GUGA*UGCC | 1 |
| AAUG*CAUU | 1 |
| AGAG*CCGU | 1 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 4 |
| UU*UU | 2 |
| UG*GC | 1 |
| AU*AU | 1 |
| GA*CG | 1 |
| GC*CCU | 1 |
- Annotations
-
- (7)
- Tandem non-canonical cWW pairs (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.05 | Avg 0.51 | Max 0.96
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