Motif IL_52184.1 Version IL_52184.1 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9	1-9	2-6	6-7
1	IL_4W23_005	4W23	0.8700	0	2	SSU rRNA	U	57	C	58	U	59	A	60	A	61	G	62	*	C	86	U	87	G	88	cWW	ncWH	cWW
2	IL_3U5F_006	3U5F	0.8515	0	6	SSU rRNA	U	58	C	59	U	60	A	61	A	62	G	63	*	C	87	U	88	G	89	cWW	ncWH	cWW
3	IL_1VX6_086	1VX6	0.0000	1	A	LSU rRNA	A	2169	G	2170	U	2171	C	2172	G	2173	G	2174	*	C	2626	U	2627	U	2629	cWW		cWW
4	IL_4W21_109	4W21	0.3386	1	5	LSU rRNA	A	2850	G	2851	U	2852	C	2853	G	2854	G	2855	*	C	3837	U	3838	U	3840	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUAAG*CUG	2
AGUCGG*CUGU	2

Non-Watson-Crick part of the motif

Sequence	Counts
CUAA*U	2
GUCG*UG	2

Release history

Release	1.18
Date	2014-10-07
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_52184.1	Only in the parent motif
IL_70102.1 Compare	IL_3U5F_006	IL_4W21_109, IL_4W23_005, IL_1VX6_086
IL_01827.1 Compare	IL_1VX6_086	IL_4W21_109, IL_3U5F_006, IL_4W23_005	IL_3J7A_005, IL_4BPP_006

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-L-R-L-L-L-cWW
Heat map statistics: Min 0.34 | Avg 0.55 | Max 1.00

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Coloring options: Nucleotide numbers

Motif IL_52184.1 Version IL_52184.1 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_52184.1 Version IL_52184.1 of this group appears in releases 1.18 to 1.18

Download

Csv

Json