Motif IL_01827.1 Version IL_01827.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-5 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX6_086 | 1VX6 | 0.9358 | 2 | A | 28S ribosomal RNA | A | 2169 | G | 2170 | C | 2172 | G | 2173 | G | 2174 | * | C | 2626 | U | 2627 | U | 2629 | cWW | cWW | |
| 2 | IL_4BPP_006 | 4BPP | 0.0000 | 1 | A | 18S RRNA | U | 57 | G | 58 | C | 60 | A | 61 | G | 62 | * | C | 83 | U | 84 | G | 85 | cWW | cWH | cWW |
| 3 | IL_3J7A_005 | 3J7A | 0.2641 | 1 | A | SSU rRNA | U | 58 | G | 59 | A | 61 | A | 62 | G | 63 | * | C | 89 | U | 90 | G | 91 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 1 |
| UGCCAG*CUG | 1 |
| UGAAAG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCG*UG | 1 |
| GCCA*U | 1 |
| GAAA*U | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01827.1 | Only in the parent motif |
|---|---|---|---|
| IL_43284.1 Compare | IL_4BPP_006 | IL_3J7A_005, IL_1VX6_086 |
Children motifs
| Child motif | Common motif instances | Only in IL_01827.1 | Only in the child motif |
|---|---|---|---|
| IL_53587.2 Compare | IL_3J7A_005, IL_4BPP_006 | IL_1VX6_086 | IL_1S72_046, IL_3U5H_052, IL_4W21_075, IL_3U5H_062, IL_4TS2_003, IL_4IOA_043, IL_2QBG_045, IL_4CUV_064, IL_4CUV_084, IL_1VX6_063, IL_4QCN_030, IL_3U5H_085, IL_4QCN_041, IL_1VW3_035, IL_1VW3_070, IL_4A1B_081 |
| IL_52184.1 Compare | IL_1VX6_086 | IL_3J7A_005, IL_4BPP_006 | IL_4W21_109, IL_3U5F_006, IL_4W23_005 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-cWW-cWH-L-L-cWW
- Heat map statistics
- Min 0.26 | Avg 0.48 | Max 0.94
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