Motif IL_53251.1 Version IL_53251.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_001 | 5UNE | 0.0000 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWw | cWW |
| 2 | IL_1SI3_001 | 1SI3 | 0.1761 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 3 | IL_1SI2_002 | 1SI2 | 0.1912 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 4 | IL_4V88_395 | 4V88 | 0.1916 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | |
| 5 | IL_5UNE_009 | 5UNE | 0.1971 | 0 | Isolated non-canonical cWW contact | A+B | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UGA | 2 |
| UGA*UGA | 2 |
| AGA*UGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 5 |
- Annotations
-
- Isolated non-canonical cWW contact (5)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.14 | Max 0.22
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