Motif IL_55070.1 Version IL_55070.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-10 | 2-12 | 3-9 | 5-8 | 6-7 | 7-8 | 10-11 | 11-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7P_034 | 3J7P | 0.0000 | 0 | 5 | LSU rRNA | G | 745 | A | 746 | A | 747 | G | 748 | G | 749 | U | 750 | * | G | 912 | U | 913 | U | 914 | A | 915 | C | 916 | A | 917 | G | 918 | C | 919 | cWW | ntSH | ntHW | ncWW | ncWW | ncSH | ncWH | ||
| 2 | IL_4R0D_007 | 4R0D | 0.9906 | 0 | A | Group II catalytic intron | U | 125 | G | 126 | C | 127 | C | 128 | C | 129 | U | 130 | * | A | 139 | G | 140 | G | 141 | U | 142 | G | 143 | C | 144 | C | 145 | A | 146 | cWW | ncWW | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGGU*GUUACAGC | 1 |
| UGCCCU*AGGUGCCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGG*UUACAG | 1 |
| GCCC*GGUGCC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-cWW-cWW
- Heat map statistics
- Min 0.99 | Avg 0.50 | Max 0.99
Coloring options: