Motif IL_55351.2 Version IL_55351.2 of this group appears in releases 3.80 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5VSU_002 | 5VSU | 0.7226 | 0 | I | U6 snRNA | C | 66 | C | 67 | C | 68 | * | G | 78 | A | 79 | G | 81 | cWW | cWWa | cWW |
| 2 | IL_3MOJ_002 | 3MOJ | 0.5781 | 0 | A | LSU rRNA | G | 2569 | G | 2570 | U | 2571 | * | A | 2513 | U | 2514 | C | 2515 | cWW | ncWWa | ncWW |
| 3 | IL_7TZS_001 | 7TZS | 0.2503 | 1 | X | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
| 4 | IL_8F4O_005 | 8F4O | 0.0000 | 1 | B | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
| 5 | IL_7A0S_052 | 7A0S | 0.3676 | 1 | X | LSU rRNA | U | 1447 | A | 1448 | C | 1449 | * | G | 1573 | A | 1574 | G | 1576 | cWW | ncwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGU*AUAC | 2 |
| CCC*GAG | 1 |
| GGU*AUC | 1 |
| UAC*GACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UA | 2 |
| C*A | 1 |
| G*U | 1 |
| A*AC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.25 | Avg 0.44 | Max 0.78
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