Motif IL_55953.1 Version IL_55953.1 of this group appears in releases 3.2 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_005 | 3PDR | 0.7409 | 0 | X | M-box riboswitch (ykoK leader) | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | * | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | ntHS | ncWW | ncWW | |
| 2 | IL_4QK8_001 | 4QK8 | 0.1466 | 0 | A | C-di-AMP riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 30 | C | 31 | * | G | 94 | C | 95 | U | 96 | A | 97 | A | 98 | C | 99 | cWW | tSH | ncBW | cWW | |
| 3 | IL_4QLM_002 | 4QLM | 0.1164 | 0 | A | cyclic di-AMP riboswitch | G | 27 | G | 28 | A | 29 | C | 30 | C | 31 | C | 32 | * | G | 96 | C | 97 | U | 98 | A | 99 | A | 100 | C | 101 | cWW | tSH | ncBW | cWW | |
| 4 | IL_4QK9_001 | 4QK9 | 0.0000 | 0 | A | C-di-AMP riboswitch | G | 29 | G | 30 | A | 31 | C | 32 | C | 33 | C | 34 | * | G | 98 | C | 99 | U | 100 | A | 101 | A | 102 | C | 103 | cWW | tSH | ncBW | cWW | |
| 5 | IL_4W90_002 | 4W90 | 0.1146 | 0 | C | cyclic di-AMP riboswitch | G | 28 | G | 29 | A | 30 | C | 31 | C | 32 | C | 33 | * | G | 101 | C | 102 | U | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACCC*GCUAAC | 3 |
| AAAAAU*GCCAAU | 1 |
| GGAACC*GCUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACC*CUAA | 3 |
| AAAA*CCAA | 1 |
| GAAC*CUAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
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- (5)
- Basepair signature
- cWW-tSH-R-tHS-L-bif-cWW
- Heat map statistics
- Min 0.11 | Avg 0.31 | Max 0.76
Coloring options: