Motif IL_58103.1 Version IL_58103.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_115 | 4WF9 | 0.2040 | 0 | Symmetric double minor groove platform | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | A | 43 | A | 44 | C | 45 | A | 46 | cWW | ncWS | cWW | ntSW | |
| 2 | IL_5FDV_114 | 5FDV | 0.0000 | 0 | Symmetric double minor groove platform (H) | 1B | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | cSH | cWW | cWS | cWW | tSW |
| 3 | IL_4V9F_104 | 4V9F | 0.0838 | 0 | Symmetric double minor groove platform | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
| 4 | IL_4V8P_155 | 4V8P | 0.1820 | 0 | Symmetric double minor groove platform (H) | C3 | 5S rRNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | cWW | cWW | tSW | ||
| 5 | IL_5J7L_358 | 5J7L | 0.2655 | 0 | Symmetric double minor groove platform | DB | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GAACA | 2 |
| UACCC*GAACA | 1 |
| AUCCC*GAACU | 1 |
| ACCCC*GAACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*AAC | 3 |
| ACC*AAC | 1 |
| CCC*AAC | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Symmetric double minor groove platform (3)
- Symmetric double minor groove platform (H) (2)
- Basepair signature
- cWW-cSH-L-cWS-tSW-R-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.18 | Max 0.33
Coloring options: