Motif IL_58103.2 Version IL_58103.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-3	1-10	4-10	5-6	6-9
1	IL_5J7L_358	5J7L	0.2655	Symmetric double minor groove platform	DB	5S rRNA	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW
2	IL_5NS3_002	5NS3	0.1915	Symmetric double minor groove platform	C	double-stranded RNA	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW
3	IL_4V8P_155	4V8P	0.1820	Symmetric double minor groove platform (H)	C3	5S rRNA	A	32	U	33	C	34	C	35	C	36	*	G	41	A	42	A	43	C	44	U	45		cWW		cWW	tSW
4	IL_4V9F_104	4V9F	0.0838	Symmetric double minor groove platform	9	5S rRNA	U	33	A	34	C	35	C	36	C	37	*	G	43	A	44	A	45	C	46	A	47	cSH	cWW	cWS	cWW	tSW
5	IL_5FDV_114	5FDV	0.0000	Symmetric double minor groove platform (H)	1B	5S rRNA	U	34	U	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	A	48	cSH	cWW	cWS	cWW	tSW
6	IL_4WF9_115	4WF9	0.2040	Symmetric double minor groove platform	Y	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	42	A	43	A	44	C	45	A	46		cWW	ncWS	cWW	ntSW
7	IL_5TBW_376	5TBW	0.1951	Symmetric double minor groove platform	AS	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACCCC*GAACU	2
UUCCC*GAACA	2
AUCCC*GAACU	1
UACCC*GAACA	1
UUCCC*GAUCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCC*AAC	3
CCC*AAC	2
ACC*AAC	1
UCC*AUC	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Symmetric double minor groove platform (5)
Symmetric double minor groove platform (H) (2)
Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW
Heat map statistics: Min 0.08 | Avg 0.19 | Max 0.36

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Coloring options: Nucleotide numbers

Motif IL_58103.2 Version IL_58103.2 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_58103.2 Version IL_58103.2 of this group appears in releases 3.3 to 3.11

Download

Csv

Json