Motif IL_58103.3 Version IL_58103.3 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-3	1-10	4-10	5-6	6-9
1	IL_5J7L_358	5J7L	0.2655	Symmetric double minor groove platform	DB	5S rRNA	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW
2	IL_5NS3_002	5NS3	0.1915	Symmetric double minor groove platform	C	double-stranded RNA	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW
3	IL_4V9F_104	4V9F	0.0838	Symmetric double minor groove platform	9	5S rRNA	U	33	A	34	C	35	C	36	C	37	*	G	43	A	44	A	45	C	46	A	47	cSH	cWW	cWS	cWW	tSW
4	IL_5FDV_114	5FDV	0.0000	Symmetric double minor groove platform (H)	1B	5S rRNA	U	34	U	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	A	48	cSH	cWW	cWS	cWW	tSW
5	IL_5TBW_376	5TBW	0.1951	Symmetric double minor groove platform	AS	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSW
6	IL_4WF9_115	4WF9	0.2040	Symmetric double minor groove platform	Y	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	42	A	43	A	44	C	45	A	46		cWW	ncWS	cWW	ntSW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACCCC*GAACU	2
UUCCC*GAACA	2
UACCC*GAACA	1
UUCCC*GAUCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCC*AAC	2
UCC*AAC	2
ACC*AAC	1
UCC*AUC	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Symmetric double minor groove platform (5)
Symmetric double minor groove platform (H) (1)
Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW
Heat map statistics: Min 0.08 | Avg 0.19 | Max 0.36

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Coloring options: Nucleotide numbers

Motif IL_58103.3 Version IL_58103.3 of this group appears in releases 3.12 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_58103.3 Version IL_58103.3 of this group appears in releases 3.12 to 3.17

Download

Csv

Json