Motif IL_58179.1 Version IL_58179.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | 4-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8VMA_001 | 8VMA | 0.3403 | 1 | C | RNA (88-MER) | G | 16 | U | 17 | U | 18 | G | 19 | * | C | 22 | C | 23 | C | 24 | C | 26 | cWW | ncWW | cWW | cWW | ncWW | |
2 | IL_5EW4_001 | 5EW4 | 0.2623 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (22-mer) | C | 14 | C | 15 | C | 16 | G | 17 | * | C | 8 | C | 9 | C | 10 | G | 11 | cWW | cWw | cBW | cWW | |
3 | IL_205D_001 | 205D | 0.2549 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 5 | U | 6 | U | 7 | G | 8 | * | U | 17 | U | 18 | U | 19 | G | 20 | cWW | cwW | cWw | cWW | |
4 | IL_7A0S_040 | 7A0S | 0.2001 | 0 | Tandem non-canonical cWW pairs | X | LSU rRNA | A | 1175 | U | 1176 | U | 1177 | C | 1178 | * | G | 1196 | U | 1197 | C | 1198 | U | 1199 | cWW | cWW | ncWw | cWW | |
5 | IL_3TZR_003 | 3TZR | 0.0000 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (20-mer) + RNA (16-mer) | C | 62 | U | 63 | U | 64 | C | 65 | * | G | 102 | U | 103 | C | 104 | G | 105 | cWW | cWW | cWw | cWW | |
6 | IL_2PN3_004 | 2PN3 | 0.1336 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (24-mer) + RNA (20-mer) | C | 62 | U | 63 | U | 64 | C | 65 | * | G | 102 | U | 103 | C | 104 | G | 105 | cWW | cWW | cWw | cWW | |
7 | IL_8C3A_135 | 8C3A | 0.2622 | 0 | Tandem non-canonical cWW pairs (H) | 1 | LSU rRNA | C | 3276 | U | 3277 | U | 3278 | A | 3279 | * | U | 3265 | U | 3266 | U | 3267 | G | 3268 | cWW | cWw | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUUC*GUCG | 2 |
GUUG*CCCAC | 1 |
CCCG*CCCG | 1 |
UUUG*UUUG | 1 |
AUUC*GUCU | 1 |
CUUA*UUUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UU*UC | 3 |
UU*UU | 2 |
UU*CCA | 1 |
CC*CC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (5)
- Tandem non-canonical cWW pairs (H) (1)
- (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.26 | Max 0.49
Coloring options: