Motif IL_58384.1 Version IL_58384.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KXK_001 | 1KXK | 0.2810 | 2 | A | ai5g group II Self-splicing intron | U | 8 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
| 2 | IL_4WF9_071 | 4WF9 | 0.0000 | 2 | Major groove intercalation | X | LSU rRNA | U | 1925 | A | 1928 | * | U | 1868 | G | 1869 | cWW | cWW |
| 3 | IL_4R4V_001 | 4R4V | 0.1866 | 1 | Minor groove platform | A | VS ribozyme RNA | U | 777 | A | 779 | * | U | 607 | G | 608 | cWW | cWW |
| 4 | IL_6JQ5_002 | 6JQ5 | 0.6566 | 2 | Multiple bulged bases | A | RNA (82-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 5 | IL_6JQ5_005 | 6JQ5 | 0.6761 | 2 | Multiple bulged bases | B | RNA (82-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 6 | IL_6JQ6_005 | 6JQ6 | 0.6833 | 2 | Multiple bulged bases | U | RNA (81-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 3 |
| UAUC*GG | 1 |
| UAAA*UG | 1 |
| UUA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 3 |
| AU* | 1 |
| AA* | 1 |
| U* | 1 |
- Annotations
-
- Multiple bulged bases (3)
- (1)
- Minor groove platform (1)
- Major groove intercalation (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.44 | Max 0.85
Coloring options: