Motif IL_59221.1 Version IL_59221.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5TBW_064 | 5TBW | 0.1060 | 0 | Other IL | 1 | LSU rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | ncWW | cSW | cWW | |
2 | IL_8C3A_070 | 8C3A | 0.0000 | 0 | Other IL (H) | 1 | LSU rRNA | G | 1614 | A | 1615 | U | 1616 | A | 1617 | * | U | 1820 | G | 1821 | C | 1822 | cWW | cSW | cWW | ||
3 | IL_8C3A_419 | 8C3A | 0.3874 | 0 | CM | SSU rRNA | G | 495 | G | 496 | U | 497 | C | 498 | * | G | 485 | G | 486 | C | 487 | cWW | ncWw | ncWW | ncSW | cWW | |
4 | IL_7KJT_002 | 7KJT | 0.4642 | 0 | A | tRNA | C | 39 | C | 40 | A | 41 | G | 42 | * | C | 28 | U | 29 | G | 30 | ncWW | cWW | ||||
5 | IL_6ZDU_001 | 6ZDU | 0.4746 | 0 | C | Chains: C,D | A | 1283 | U | 1284 | A | 1285 | G | 1286 | * | C | 1268 | U | 1269 | U | 1270 | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUA*UGC | 2 |
GGUC*GGC | 1 |
CCAG*CUG | 1 |
AUAG*CUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AU*G | 2 |
GU*G | 1 |
CA*U | 1 |
UA*U | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Other IL (1)
- Other IL (H) (1)
- Basepair signature
- cWW-L-cSW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.33 | Max 0.51
Coloring options: