Motif IL_59477.1 Version IL_59477.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5WTI_001 | 5WTI | 0.6761 | 3 | Other IL | B | RNA (123-MER) | C | 25 | A | 26 | A | 27 | C | 28 | * | G | 0 | C | 1 | G | 5 | cWW | ncWW | cWW |
| 2 | IL_1NUV_003 | 1NUV | 0.8592 | 3 | F+E | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | C | 27 | cWW | ncWW | cWW | |
| 3 | IL_1NUV_001 | 1NUV | 0.7972 | 3 | B+A | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | C | 27 | cWW | ncWW | cWW | |
| 4 | IL_8VTW_108 | 8VTW | 0.4734 | 2 | 1A | LSU rRNA | G | 2843 | G | 2844 | G | 2845 | G | 2846 | * | C | 2870 | C | 2871 | C | 2874 | cWW | cWS | cWW | |
| 5 | IL_2O3Y_003 | 2O3Y | 0.1284 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
| 6 | IL_2OE8_002 | 2OE8 | 0.0000 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW | |
| 7 | IL_2OE5_002 | 2OE5 | 0.0434 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 3 |
| GGAG*CCGAGC | 2 |
| CAAC*GCGAGG | 1 |
| GGGG*CCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 3 |
| GA*CGAG | 2 |
| AA*CGAG | 1 |
| GG*CGA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Other IL (1)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.04 | Avg 0.49 | Max 0.86
Coloring options: