Motif IL_59563.1 Version IL_59563.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_006 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | tSW | tHH | cSH | tWH | tHS | cWW |
| 2 | IL_4CUV_006 | 4CUV | 0.0965 | 0 | 1 | 25S RRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | tSW | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGUAA*UGAAGCG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGUA*GAAGC | 2 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_59563.1 | Only in the parent motif |
|---|---|---|---|
| IL_76486.1 Compare | IL_3U5H_006 | IL_4CUV_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_59563.1 | Only in the child motif |
|---|---|---|---|
| IL_59563.2 Compare | IL_4CUV_006, IL_3U5H_006 | IL_1VWW_005 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: