Motif IL_59677.1 Version IL_59677.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_071 | 7A0S | 0.1510 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1947 | C | 1950 | * | G | 1916 | C | 1917 | cWW | cWW | |
| 2 | IL_4WF9_076 | 4WF9 | 0.1214 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1991 | C | 1994 | * | G | 1960 | C | 1961 | cWW | cWW | |
| 3 | IL_7RQB_076 | 7RQB | 0.0000 | 2 | Bulged stacked bases | 1A | LSU rRNA | G | 1964 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW | |
| 4 | IL_5J7L_318 | 5J7L | 0.0379 | 2 | Bulged stacked bases | DA | LSU rRNA | G | 1964 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW | |
| 5 | IL_5TBW_089 | 5TBW | 0.2424 | 2 | Bulged stacked bases | 1 | LSU rRNA | G | 2307 | U | 2310 | * | G | 2276 | C | 2277 | cWW | cWW | |
| 6 | IL_4V9F_070 | 4V9F | 0.1885 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 2005 | U | 2008 | * | G | 1974 | C | 1975 | cWW | cWW | |
| 7 | IL_1R3E_002 | 1R3E | 0.2279 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW | |
| 8 | IL_7Q80_001 | 7Q80 | 0.2516 | 2 | Multiple bulged bases | B+C | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
| 9 | IL_7Q80_003 | 7Q80 | 0.3014 | 2 | Multiple bulged bases | E+F | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
| 10 | IL_7Q82_001 | 7Q82 | 0.2969 | 2 | Multiple bulged bases | B+C | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
| 11 | IL_7V9E_001 | 7V9E | 0.2622 | 2 | Multiple bulged bases | A | RNA (68-MER) | C | 11 | G | 12 | * | C | 38 | G | 41 | cWW | cWW | |
| 12 | IL_397D_001 | 397D | 0.7659 | 3 | Multiple bulged bases | B+A | RNA (12-mer) | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW | |
| 13 | IL_7D3J_001 | 7D3J | 0.4252 | 2 | Multiple bulged bases | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
| 14 | IL_7EU9_001 | 7EU9 | 0.4584 | 2 | Multiple bulged bases | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
| 15 | IL_5TBW_136 | 5TBW | 0.5254 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 3349 | C | 3350 | * | G | 3353 | G | 3356 | ncWW | cWW | |
| 16 | IL_4ERD_001 | 4ERD | 0.6655 | 2 | C+D | RNA (22-mer) | C | 120 | C | 123 | * | G | 146 | G | 147 | cWW | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAC*GC | 4 |
| CG*CUAG | 4 |
| CC*GUUG | 3 |
| GCAU*GC | 2 |
| GUUCG*CC | 1 |
| CU*AUCUG | 1 |
| CGAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA* | 6 |
| *UA | 4 |
| *UU | 3 |
| UUC* | 1 |
| *UCU | 1 |
| GA* | 1 |
- Annotations
-
- Multiple bulged bases (9)
- Bulged stacked bases (6)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.04 | Avg 0.34 | Max 0.77
Coloring options: