Motif IL_59677.4 Version IL_59677.4 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5TBW_136 | 5TBW | 0.3624 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 3349 | C | 3350 | * | G | 3353 | G | 3356 | ncWW | cWW |
2 | IL_7EU9_001 | 7EU9 | 0.3532 | 2 | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
3 | IL_7D3J_001 | 7D3J | 0.3136 | 2 | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
4 | IL_8C3A_142 | 8C3A | 0.2545 | 2 | Multiple bulged bases (H) | 1 | LSU rRNA | C | 3314 | C | 3315 | * | G | 3318 | G | 3321 | cWW | cWW |
5 | IL_397D_001 | 397D | 0.2179 | 3 | Multiple bulged bases | B+A | RNA (12-mer) | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW |
6 | IL_7V9E_001 | 7V9E | 0.1339 | 2 | Multiple bulged bases | A | RNA (68-MER) | C | 11 | G | 12 | * | C | 38 | G | 41 | cWW | cWW |
7 | IL_7Q82_001 | 7Q82 | 0.1049 | 2 | B+C | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
8 | IL_7Q80_003 | 7Q80 | 0.1103 | 2 | E+F | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
9 | IL_7Q80_001 | 7Q80 | 0.0000 | 2 | B+C | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
10 | IL_5TBW_089 | 5TBW | 0.2577 | 2 | Bulged stacked bases | 1 | LSU rRNA | G | 2307 | U | 2310 | * | G | 2276 | C | 2277 | cWW | cWW |
11 | IL_8C3A_094 | 8C3A | 0.2565 | 2 | 1 | LSU rRNA | G | 2285 | U | 2288 | * | G | 2254 | C | 2255 | cWW | cWW | |
12 | IL_8C3A_434 | 8C3A | 0.1913 | 2 | CM | SSU rRNA | G | 803 | A | 806 | * | U | 836 | C | 837 | cWW | cWW | |
13 | IL_1R3E_002 | 1R3E | 0.1817 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW |
14 | IL_4V9F_070 | 4V9F | 0.2074 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 2005 | U | 2008 | * | G | 1974 | C | 1975 | cWW | cWW |
15 | IL_5J7L_318 | 5J7L | 0.2555 | 2 | Bulged stacked bases | DA | LSU rRNA | G | 1964 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW |
16 | IL_8VTW_075 | 8VTW | 0.2510 | 2 | 1A | LSU rRNA | G | 1964 | C | 1967 | * | G | 1933 | C | 1934 | cWW | cWW | |
17 | IL_4WF9_076 | 4WF9 | 0.2451 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1991 | C | 1994 | * | G | 1960 | C | 1961 | cWW | cWW |
18 | IL_7A0S_071 | 7A0S | 0.2929 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1947 | C | 1950 | * | G | 1916 | C | 1917 | cWW | cWW |
19 | IL_6IV9_001 | 6IV9 | 0.5918 | 2 | Multiple bulged bases | B | crRNA (50-MER) | G | -9 | U | -6 | * | A | -29 | C | -28 | cWW | cWW |
20 | IL_8D29_005 | 8D29 | 0.5454 | 3 | F | RNA (34-MER) | C | 21 | U | 25 | * | A | 10 | G | 11 | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CC*GUUG | 4 |
CG*CUAG | 4 |
GCAC*GC | 4 |
GCAU*GC | 3 |
CU*AUCUG | 1 |
GUUA*UC | 1 |
GUUCG*CC | 1 |
GUCU*AC | 1 |
CCCUU*AG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CA* | 7 |
*UU | 4 |
*UA | 4 |
*UCU | 1 |
UU* | 1 |
UUC* | 1 |
UC* | 1 |
CCU* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Multiple bulged bases (5)
- Bulged stacked bases (5)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.04 | Avg 0.36 | Max 0.96
Coloring options: