#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_5TBW_1365TBW0.36242Multiple bulged bases1 LSU rRNAC3349C3350*G3353G3356ncWWcWW
2 IL_7EU9_0017EU90.35322BRNA (43-MER)C11C12*G16G19cWWcWW
3 IL_7D3J_0017D3J0.31362BRNA (43-MER)C11C12*G16G19cWWcWW
4 IL_8C3A_1428C3A0.25452Multiple bulged bases (H)1 LSU rRNAC3314C3315*G3318G3321cWWcWW
5 IL_397D_001397D0.21793Multiple bulged basesB+ARNA (12-mer)C39U40*A22G26cWWcWW
6 IL_7V9E_0017V9E0.13392Multiple bulged basesARNA (68-MER)C11G12*C38G41cWWcWW
7 IL_7Q82_0017Q820.10492B+CRNA 2 + RNA 3C13G14*C35G38cWWcWW
8 IL_7Q80_0037Q800.11032E+FRNA 2 + RNA 3C13G14*C35G38cWWcWW
9 IL_7Q80_0017Q800.00002B+CRNA 2 + RNA 3C13G14*C35G38cWWcWW
10 IL_5TBW_0895TBW0.25772Bulged stacked bases1 LSU rRNAG2307U2310*G2276C2277cWWcWW
11 IL_8C3A_0948C3A0.256521 LSU rRNAG2285U2288*G2254C2255cWWcWW
12 IL_8C3A_4348C3A0.19132CM SSU rRNAG803A806*U836C837cWWcWW
13 IL_1R3E_0021R3E0.18173Multiple bulged basesE+DRNA (17-mer)G408G412*C415C416cWWcWW
14 IL_4V9F_0704V9F0.20742Bulged stacked bases0 LSU rRNAG2005U2008*G1974C1975cWWcWW
15 IL_5J7L_3185J7L0.25552Bulged stacked basesDA LSU rRNAG1964C1967*G1933C1934cWWcWW
16 IL_8VTW_0758VTW0.251021A LSU rRNAG1964C1967*G1933C1934cWWcWW
17 IL_4WF9_0764WF90.24512Bulged stacked basesX LSU rRNAG1991C1994*G1960C1961cWWcWW
18 IL_7A0S_0717A0S0.29292Bulged stacked basesX LSU rRNAG1947C1950*G1916C1917cWWcWW
19 IL_6IV9_0016IV90.59182Multiple bulged basesBcrRNA (50-MER)G-9U-6*A-29C-28cWWcWW
20 IL_8D29_0058D290.54543FRNA (34-MER)C21U25*A10G11ncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GUUG4
CG*CUAG4
GCAC*GC4
GCAU*GC3
CU*AUCUG1
GUUA*UC1
GUUCG*CC1
GUCU*AC1
CCCUU*AG1
Non-Watson-Crick part of the motif
SequenceCounts
CA*7
*UU4
*UA4
*UCU1
UU*1
UUC*1
UC*1
CCU*1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
  • Multiple bulged bases (5)
  • Bulged stacked bases (5)
  • Multiple bulged bases (H) (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.04 | Avg 0.36 | Max 0.96
    Help

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