Motif IL_60695.3 Version IL_60695.3 of this group appears in releases 3.21 to 3.45
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-4 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6OL3_001 | 6OL3 | 0.9341 | 1 | C | VA RNA | A | 35 | A | 36 | G | 37 | * | C | 122 | A | 123 | G | 124 | G | 125 | U | 126 | U | 128 | cWW | cWW |
| 2 | IL_5F9R_001 | 5F9R | 0.1103 | 1 | A | RNA (116-MER) | A | 26 | G | 27 | G | 29 | * | C | 58 | A | 59 | A | 60 | G | 61 | U | 62 | U | 63 | cWW | cWW |
| 3 | IL_5FQ5_001 | 5FQ5 | 0.0546 | 1 | A | SGRNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 44 | U | 45 | cWW | cWW |
| 4 | IL_5B2T_001 | 5B2T | 0.0000 | 1 | A | Guide RNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 44 | U | 45 | cWW | cWW |
| 5 | IL_5VW1_001 | 5VW1 | 0.1069 | 1 | C | sgRNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 44 | U | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAG*CAAGUU | 4 |
| AAG*CAGGUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAGU | 4 |
| A*AGGUG | 1 |
Release history
| Release | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-R-R-R-cWW
- Heat map statistics
- Min 0.05 | Avg 0.35 | Max 0.94
Coloring options: