Motif IL_60760.2 Version IL_60760.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4M6D_013 | 4M6D | 0.1538 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 2 | IL_4M4O_004 | 4M4O | 0.0000 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 3 | IL_3BNL_002 | 3BNL | 0.7075 | 1 | A+B | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 17 | G | 18 | cWW | cwW | cWW |
| 4 | IL_4R0D_002 | 4R0D | 0.7648 | 4 | A | Group II catalytic intron | G | 74 | A | 75 | C | 76 | * | G | 103 | U | 108 | C | 109 | cWW | cWW | cWW |
| 5 | IL_4CUV_113 | 4CUV | 0.9236 | 0 | 1 | 25S RRNA | G | 2863 | A | 2864 | U | 2865 | * | G | 2824 | C | 2825 | U | 2826 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| CAC*GAAG | 1 |
| GAC*GAAGCUC | 1 |
| GAU*GCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| A*AA | 1 |
| A*AAGCU | 1 |
| A*C | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_60760.2 | Only in the parent motif |
|---|---|---|---|
| IL_60760.1 Compare | IL_4M4O_004, IL_3BNL_002, IL_4M6D_013, IL_4CUV_113 | IL_4R0D_002 | IL_3Q1Q_006, IL_3E5C_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.55 | Max 0.98
Coloring options: