Motif IL_60760.1 Version IL_60760.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_113 | 4CUV | 0.6973 | 0 | 1 | LSU rRNA | G | 2863 | A | 2864 | U | 2865 | * | G | 2824 | C | 2825 | U | 2826 | cWW | cWWa | cWW | |
| 2 | IL_3E5C_001 | 3E5C | 0.5973 | 3 | Isolated non-canonical cWW pair | A | SAM-III riboswitch aptamer (SMK box) | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | C | 32 | cWW | cWW | cWW |
| 3 | IL_3BNL_002 | 3BNL | 0.3969 | 1 | A+B | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 17 | G | 18 | cWW | cwW | cWW | |
| 4 | IL_3Q1Q_006 | 3Q1Q | 0.0000 | 1 | B | RNase P class A | A | 179 | G | 180 | C | 181 | * | G | 198 | G | 199 | U | 201 | cWW | ncWB | cWW | |
| 5 | IL_4M4O_004 | 4M4O | 0.4768 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | ||
| 6 | IL_4M6D_013 | 4M6D | 0.5231 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| GAU*GCU | 1 |
| GAU*AGAUGC | 1 |
| CAC*GAAG | 1 |
| AGC*GGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| A*C | 1 |
| A*GAUG | 1 |
| A*AA | 1 |
| G*GC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_60760.1 | Only in the parent motif |
|---|---|---|---|
| IL_22658.1 Compare | IL_4M4O_004, IL_4M6D_013 | IL_3Q1Q_006, IL_3E5C_001, IL_3BNL_002, IL_4CUV_113 | IL_1LNG_001, IL_4BPP_063 |
| IL_16029.2 Compare | IL_3BNL_002, IL_4CUV_113 | IL_3Q1Q_006, IL_3E5C_001, IL_4M4O_004, IL_4M6D_013 | IL_2GDI_005, IL_4A1B_107, IL_2GDI_001, IL_3U5H_109 |
| IL_77277.1 Compare | IL_3Q1Q_006 | IL_3E5C_001, IL_3BNL_002, IL_4CUV_113, IL_4M4O_004, IL_4M6D_013 | IL_1X8W_009, IL_4IOA_061, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_1J2B_003, IL_1VW3_029, IL_3U5H_071, IL_4A1B_093 |
| IL_38207.1 Compare | IL_3E5C_001 | IL_3Q1Q_006, IL_3BNL_002, IL_4M4O_004, IL_4CUV_113, IL_4M6D_013 | IL_1S72_072 |
Children motifs
| Child motif | Common motif instances | Only in IL_60760.1 | Only in the child motif |
|---|---|---|---|
| IL_60760.2 Compare | IL_4M4O_004, IL_3BNL_002, IL_4M6D_013, IL_4CUV_113 | IL_3Q1Q_006, IL_3E5C_001 | IL_4R0D_002 |
| IL_75508.1 Compare | IL_3Q1Q_006 | IL_3E5C_001, IL_3BNL_002, IL_4CUV_113, IL_4M4O_004, IL_4M6D_013 | IL_3LOA_003, IL_4CUV_082, IL_4W21_074, IL_2QBG_063, IL_4QCN_061, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_1VW3_047, IL_4W21_107, IL_1VX6_084 |
| IL_84401.1 Compare | IL_3E5C_001 | IL_3Q1Q_006, IL_3BNL_002, IL_4M4O_004, IL_4CUV_113, IL_4M6D_013 | IL_1VX6_098, IL_1S72_072 |
- Annotations
-
- (5)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.55 | Max 0.98
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