Motif IL_60992.4 Version IL_60992.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9		10		11		12		13		14		15		16	1-14	1-16	2-6	2-15	3-6	4-5	7-14	8-12	9-13
1	IL_7A0S_009	7A0S	0.1057	2	X	LSU rRNA	G	492	A	493	A	494	C	495	*	G	506	A	507	G	508	U	509	G	510	A	511	A	512	A	513	A	515	G	516	A	517	C	519	tSS	cWW	cSW	ntHH	tHS	cWW	cWB	tWH	ntSH
2	IL_5J7L_255	5J7L	0.0000	2	DA	LSU rRNA	G	481	A	482	A	483	C	484	*	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	tSS	cWW	cSW	ntHH	tHS	cWW	cWB	tWH	tSH
3	IL_4Y4O_191	4Y4O	0.1311	2	2A	LSU rRNA	G	481	A	482	A	483	C	484	*	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	tSS	cWW	cSW	ntHH	tHS	cWW	cWB	tWH	tSH
4	IL_4WF9_015	4WF9	0.1345	2	X	LSU rRNA	G	527	C	528	A	529	C	530	*	G	541	A	542	G	543	U	544	G	545	A	546	A	547	A	548	A	550	G	551	A	552	C	554	tSS	cWW	cSW		tHS	cWW	cWB	tWH	ntSH
5	IL_5TBW_014	5TBW	0.2777	2	1	LSU rRNA	G	376	A	377	A	378	C	379	*	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	tSS	cWW	ncSW		tHS	cWW	cWB	tWH	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAC*GAGUGAAAGAGAAC	1
GAAC*GAGUGAAAAAGAAC	1
GAAC*GAGUGAAAUAGAGC	1
GCAC*GAGUGAAAUAGAAC	1
GAAC*GAGUGAAAAAGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*AGUGAAAGAGAA	1
AA*AGUGAAAAAGAA	1
AA*AGUGAAAUAGAG	1
CA*AGUGAAAUAGAA	1
AA*AGUGAAAAAGUA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
Heat map statistics: Min 0.11 | Avg 0.16 | Max 0.31

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Coloring options: Nucleotide numbers

Motif IL_60992.4 Version IL_60992.4 of this group appears in releases 3.48 to 3.53 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_60992.4 Version IL_60992.4 of this group appears in releases 3.48 to 3.53

Download

Csv

Json