Motif IL_62504.2 Version IL_62504.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_066 | 2AW7 | 0.0000 | 0 | A | 16S ribosomal RNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | ntHS | cWW | |
| 2 | IL_4A1B_030 | 4A1B | 0.2753 | 0 | 1 | 26S RRNA | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | * | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | cWW | tSH | tSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGAAG*CCACU | 1 |
| UAGCAG*CCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*CAC | 1 |
| AGCA*CAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_62504.2 | Only in the parent motif |
|---|---|---|---|
| IL_62504.1 Compare | IL_2AW7_066, IL_4A1B_030 | IL_1VWW_146 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tSH-L-R-L-cWW
- Heat map statistics
- Min 0.28 | Avg 0.14 | Max 0.28
Coloring options: