Motif IL_62552.2 Version IL_62552.2 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7JRS_001 | 7JRS | 0.4750 | 1 | A | RNA 3D nanocage | A | 39 | C | 41 | C | 42 | U | 43 | G | 44 | C | 45 | C | 46 | * | G | 93 | U | 94 | cWW | cWW |
2 | IL_7JRS_009 | 7JRS | 0.4626 | 1 | B | RNA 3D nanocage | G | 104 | C | 106 | G | 107 | U | 108 | C | 109 | C | 110 | C | 111 | * | G | 28 | C | 29 | ncWW | cWW |
3 | IL_7UQ6_001 | 7UQ6 | 0.0000 | 2 | B | tRNA | G | 30 | G | 33 | A | 34 | A | 35 | C | 36 | C | 37 | C | 38 | * | G | 49 | C | 50 | cWW | cWW |
4 | IL_3R4F_001 | 3R4F | 0.5279 | 1 | A | pRNA | G | 14 | A | 16 | A | 17 | A | 18 | C | 19 | C | 20 | C | 21 | * | G | 34 | C | 35 | cWW | cWW |
5 | IL_7UZ0_001 | 7UZ0 | 0.5421 | 2 | A | tRNA | G | 43 | G | 46 | A | 47 | A | 48 | C | 49 | C | 50 | C | 51 | * | G | 33 | C | 34 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUGGAACCC*GC | 2 |
AGCCUGCC*GU | 1 |
GGCGUCCC*GC | 1 |
GGAAACCC*GC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGGAACC* | 2 |
GCCUGC* | 1 |
GCGUCC* | 1 |
GAAACC* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-cWW-L-L-R-L
- Heat map statistics
- Min 0.09 | Avg 0.47 | Max 0.95
Coloring options: