Motif IL_62661.1 Version IL_62661.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_048 | 2ZJR | 0.5484 | 0 | X | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | cWW | tWH | tHS | cWW | ||
| 2 | IL_3UXR_071 | 3UXR | 0.0000 | 0 | A | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | * | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | cWW | tSH | ntHS | cWW | ||
| 3 | IL_4A1B_008 | 4A1B | 0.3913 | 0 | 1 | U | 248 | G | 249 | U | 250 | A | 251 | A | 252 | * | U | 167 | G | 168 | A | 169 | A | 170 | A | 171 | cWW | ntSH | cWW | |||
| 4 | IL_2ZJR_070 | 2ZJR | 0.6482 | 0 | UAA/GAN with extra pair (H) | X | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | * | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | cWW | ntSH | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*CGAUG | 1 |
| UCAAG*CGAAG | 1 |
| UGUAA*UGAAA | 1 |
| UCAAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*GAA | 2 |
| UAA*GAU | 1 |
| GUA*GAA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_62661.1 | Only in the parent motif |
|---|---|---|---|
| IL_52210.1 Compare | IL_2ZJR_070 | IL_4A1B_008, IL_3UXR_071, IL_2ZJR_048 | IL_3PYO_026, IL_3O58_143, IL_3PYO_066 |
| IL_12912.1 Compare | IL_2ZJR_048 | IL_2ZJR_070, IL_3UXR_071, IL_4A1B_008 |
Children motifs
| Child motif | Common motif instances | Only in IL_62661.1 | Only in the child motif |
|---|---|---|---|
| IL_62661.2 Compare | IL_2ZJR_048, IL_2ZJR_070, IL_4A1B_008 | IL_3UXR_071 | IL_3V2F_071 |
- Annotations
-
- (3)
- UAA/GAN with extra pair (H) (1)
- Basepair signature
- 10_cWW-tSH--tHS-cWW
- Heat map statistics
- Min 0.39 | Avg 0.49 | Max 0.87
Coloring options: