#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-43-54-5
1 IL_5AJ0_1295AJ00.16920A2 LSU rRNAG3866C3867G3868G3869*U4525A4526C4527cWWncWWcSHcWW
2 IL_3J79_0883J790.11980Major groove platform with extra pair (H)A LSU rRNAG2684C2685G2686G2687*U3345A3346C3347cWWcWWcSHcWW
3 IL_3JCS_0843JCS0.00000Major groove platform with extra pair (H)2 LSU rRNAG637C638G639G640*U1425A1426C1427cWWncWWcSHcWW
4 IL_4V9F_0724V9F0.302600 LSU rRNAG2090G2091G2092G2093*U2652A2653C2654cWWcWWcSHcWW
5 IL_4V19_0464V190.34290A LSU rRNAG1277C1278A1279A1280*U1314A1315C1316cWWncWWcSHntSHcWW
6 IL_3J7Y_0483J7Y0.35690Major groove platform with extra pair (H)A LSU rRNAG2943C2944A2945A2946*U2980A2981C2982cWWncWWcSHntSHcWW
7 IL_3E5C_0013E5C0.80952Isolated non-canonical cWW pairASMK box (SAM-III) RiboswitchA27G28G31C32*G12A13U14cWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGG*UAC3
GCAA*UAC2
GGGG*UAC1
AGAUGC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
CG*A3
CA*A2
GG*A1
GAUG*A1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with extra pair (H) (3)
  • (3)
  • Isolated non-canonical cWW pair (1)
  • Basepair signature
    cWW-cWW-cSH-cWW
    Heat map statistics
    Min 0.12 | Avg 0.37 | Max 0.84
    Help

    Coloring options:

    IL_5AJ0_129:IL_5AJ0_129 = 0IL_5AJ0_129:IL_3J79_088 = 0.1632IL_5AJ0_129:IL_3JCS_084 = 0.1692IL_5AJ0_129:IL_4V9F_072 = 0.3654IL_5AJ0_129:IL_4V19_046 = 0.3535IL_5AJ0_129:IL_3J7Y_048 = 0.3801IL_5AJ0_129:IL_3E5C_001 = 0.8375IL_3J79_088:IL_5AJ0_129 = 0.1632IL_3J79_088:IL_3J79_088 = 0IL_3J79_088:IL_3JCS_084 = 0.1198IL_3J79_088:IL_4V9F_072 = 0.3348IL_3J79_088:IL_4V19_046 = 0.3658IL_3J79_088:IL_3J7Y_048 = 0.3676IL_3J79_088:IL_3E5C_001 = 0.8023IL_3JCS_084:IL_5AJ0_129 = 0.1692IL_3JCS_084:IL_3J79_088 = 0.1198IL_3JCS_084:IL_3JCS_084 = 0IL_3JCS_084:IL_4V9F_072 = 0.3026IL_3JCS_084:IL_4V19_046 = 0.3429IL_3JCS_084:IL_3J7Y_048 = 0.3569IL_3JCS_084:IL_3E5C_001 = 0.8095IL_4V9F_072:IL_5AJ0_129 = 0.3654IL_4V9F_072:IL_3J79_088 = 0.3348IL_4V9F_072:IL_3JCS_084 = 0.3026IL_4V9F_072:IL_4V9F_072 = 0IL_4V9F_072:IL_4V19_046 = 0.2486IL_4V9F_072:IL_3J7Y_048 = 0.2842IL_4V9F_072:IL_3E5C_001 = 0.7339IL_4V19_046:IL_5AJ0_129 = 0.3535IL_4V19_046:IL_3J79_088 = 0.3658IL_4V19_046:IL_3JCS_084 = 0.3429IL_4V19_046:IL_4V9F_072 = 0.2486IL_4V19_046:IL_4V19_046 = 0IL_4V19_046:IL_3J7Y_048 = 0.146IL_4V19_046:IL_3E5C_001 = 0.7629IL_3J7Y_048:IL_5AJ0_129 = 0.3801IL_3J7Y_048:IL_3J79_088 = 0.3676IL_3J7Y_048:IL_3JCS_084 = 0.3569IL_3J7Y_048:IL_4V9F_072 = 0.2842IL_3J7Y_048:IL_4V19_046 = 0.146IL_3J7Y_048:IL_3J7Y_048 = 0IL_3J7Y_048:IL_3E5C_001 = 0.7374IL_3E5C_001:IL_5AJ0_129 = 0.8375IL_3E5C_001:IL_3J79_088 = 0.8023IL_3E5C_001:IL_3JCS_084 = 0.8095IL_3E5C_001:IL_4V9F_072 = 0.7339IL_3E5C_001:IL_4V19_046 = 0.7629IL_3E5C_001:IL_3J7Y_048 = 0.7374IL_3E5C_001:IL_3E5C_001 = 0IL_5AJ0_129IL_3J79_088IL_3JCS_084IL_4V9F_072IL_4V19_046IL_3J7Y_048IL_3E5C_001Discrepancy0.000.200.400.600.80
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