Motif IL_62914.1 Version IL_62914.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5AJ0_129 | 5AJ0 | 0.1692 | 0 | A2 | LSU rRNA | G | 3866 | C | 3867 | G | 3868 | G | 3869 | * | U | 4525 | A | 4526 | C | 4527 | cWW | ncWW | cSH | cWW | ||
| 2 | IL_3J79_088 | 3J79 | 0.1198 | 0 | Major groove platform with extra pair (H) | A | LSU rRNA | G | 2684 | C | 2685 | G | 2686 | G | 2687 | * | U | 3345 | A | 3346 | C | 3347 | cWW | cWW | cSH | cWW | |
| 3 | IL_3JCS_084 | 3JCS | 0.0000 | 0 | Major groove platform with extra pair (H) | 2 | LSU rRNA | G | 637 | C | 638 | G | 639 | G | 640 | * | U | 1425 | A | 1426 | C | 1427 | cWW | ncWW | cSH | cWW | |
| 4 | IL_4V9F_072 | 4V9F | 0.3026 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW | ||
| 5 | IL_4V19_046 | 4V19 | 0.3429 | 0 | A | LSU rRNA | G | 1277 | C | 1278 | A | 1279 | A | 1280 | * | U | 1314 | A | 1315 | C | 1316 | cWW | ncWW | cSH | ntSH | cWW | |
| 6 | IL_3J7Y_048 | 3J7Y | 0.3569 | 0 | Major groove platform with extra pair (H) | A | LSU rRNA | G | 2943 | C | 2944 | A | 2945 | A | 2946 | * | U | 2980 | A | 2981 | C | 2982 | cWW | ncWW | cSH | ntSH | cWW |
| 7 | IL_3E5C_001 | 3E5C | 0.8095 | 2 | Isolated non-canonical cWW pair | A | SAM-III riboswitch aptamer (SMK box) | A | 27 | G | 28 | G | 31 | C | 32 | * | G | 12 | A | 13 | U | 14 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGG*UAC | 3 |
| GCAA*UAC | 2 |
| GGGG*UAC | 1 |
| AGAUGC*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG*A | 3 |
| CA*A | 2 |
| GG*A | 1 |
| GAUG*A | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra pair (H) (3)
- (3)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-cSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.37 | Max 0.84
Coloring options: