IL_3JCS_084

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62914.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

3JCS|1|2|G|637
3JCS|1|2|C|638
3JCS|1|2|G|639
3JCS|1|2|G|640
*
3JCS|1|2|U|1425
3JCS|1|2|A|1426
3JCS|1|2|C|1427

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 5

26S epsilon ribosomal RNA

Chain B

ribosomal protein L3

Chain H

ribosomal protein L13

Chain T

ribosomal protein L22