#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-44-5
1 IL_5TBW_0875TBW0.39621Major groove platform with extra pair1 LSU rRNAG2206A2207A2208G2210*C2235G2236C2237cWWcWW
2 IL_8C3A_0968C3A0.00000Major groove platform with extra pair (H)1 LSU rRNAG2369C2370G2371G2372*U2958A2959C2960cWWcWWcSHcWW
3 IL_5TBW_0915TBW0.09410Major groove platform with extra pair1 LSU rRNAG2391C2392G2393G2394*U2986A2987C2988cWWcWWcSHcWW
4 IL_7SZU_0037SZU0.31180RRNA aptamerG49C50A51C52*G25A26C27cWWcWWcSHcWW
5 IL_6DME_0036DME0.37230AppGpp RiboswitchG33A34A35G36*C20A21C22cWWcwWcSHcWW
6 IL_4V9F_0724V9F0.397500 LSU rRNAG2090G2091G2092G2093*U2652A2653C2654cWWcWWcSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGG*UAC2
GAAUG*CGC1
GCAC*GAC1
GAAG*CAC1
GGGG*UAC1
Non-Watson-Crick part of the motif
SequenceCounts
CG*A2
AAU*G1
CA*A1
AA*A1
GG*A1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Major groove platform with extra pair (2)
  • Major groove platform with extra pair (H) (1)
  • Basepair signature
    cWW-cWW-cSH-cWW
    Heat map statistics
    Min 0.09 | Avg 0.31 | Max 0.57
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