Motif IL_63702.1 Version IL_63702.1 of this group appears in releases 3.91 to 3.91
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_003 | 4ERD | 0.9039 | 2 | D+C | RNA (22-mer) | U | 119 | C | 120 | C | 123 | * | G | 146 | G | 147 | A | 148 | cWW | cWW | ntsS | ||
| 2 | IL_8AF0_004 | 8AF0 | 0.2044 | 0 | Isolated non-canonical cWW pair | D+C | RNA (19-mer) | C | 31 | C | 32 | U | 33 | * | A | 37 | C | 38 | G | 39 | cWW | ncWW | ||
| 3 | IL_8C3A_474 | 8C3A | 0.1359 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | U | 1637 | A | 1638 | C | 1639 | * | G | 1735 | A | 1736 | A | 1737 | cWW | ncWw | cWW | |
| 4 | IL_7VFT_003 | 7VFT | 0.0810 | 0 | Isolated non-canonical cWW pair | A | RNA (23-mer) | C | 11 | A | 12 | G | 13 | * | C | 11||||12_555 | A | 12||||12_555 | G | 13||||12_555 | cWW | cWW | ||
| 5 | IL_4J50_002 | 4J50 | 0.0000 | 0 | Isolated non-canonical cWW pair | A+B | RNA (19-mer) | C | 10 | A | 11 | G | 12 | * | C | 10 | A | 11 | G | 12 | cWW | cWW | ||
| 6 | IL_1SI3_001 | 1SI3 | 0.1615 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | ||
| 7 | IL_1SI2_002 | 1SI2 | 0.1453 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | ||
| 8 | IL_8P9A_408 | 8P9A | 0.1703 | 0 | Isolated non-canonical cWW pair (H) | sR | SSU rRNA | C | 646 | G | 647 | G | 648 | * | C | 686 | G | 687 | G | 688 | cWW | cWW | ||
| 9 | IL_8P9A_384 | 8P9A | 0.2362 | 0 | Isolated non-canonical cWW contact (H) | sR | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | ||
| 10 | IL_7LYF_002 | 7LYF | 0.2103 | 0 | Isolated non-canonical cWW pair | A | Dengue virus SLA | U | 46 | G | 47 | G | 48 | * | C | 84 | A | 85 | A | 86 | cWW | ncWW | ncWW | |
| 11 | IL_8C3A_459 | 8C3A | 0.2701 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | C | 1308 | G | 1309 | A | 1310 | * | U | 1275 | G | 1276 | G | 1277 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CAG | 2 |
| UGA*UGA | 2 |
| UCGAC*GGA | 1 |
| CCU*ACG | 1 |
| UAC*GAA | 1 |
| CGG*CGG | 1 |
| AGA*UGU | 1 |
| UGG*CAA | 1 |
| CGA*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 5 |
| A*A | 3 |
| CGA*G | 1 |
| C*C | 1 |
| G*A | 1 |
Release history
| Release | 3.91 |
|---|---|
| Date | 2024-12-04 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (6)
- Isolated non-canonical cWW contact (2)
- (1)
- Isolated non-canonical cWW contact (H) (1)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.31 | Max 0.96
Coloring options: