Motif IL_63702.2 Version IL_63702.2 of this group appears in releases 3.92 to 3.93
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4AOB_005 | 4AOB | 0.2475 | 0 | Isolated non-canonical cWW pair | A | SAM-I riboswitch | C | 78 | G | 79 | U | 80 | * | G | 71 | A | 72 | G | 73 | cWW | ncWW | cWW |
| 2 | IL_5UNE_001 | 5UNE | 0.1912 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWw | cWW |
| 3 | IL_5UNE_009 | 5UNE | 0.2169 | 0 | Isolated non-canonical cWW contact | A+B | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWW | |
| 4 | IL_7LYF_002 | 7LYF | 0.2070 | 0 | Isolated non-canonical cWW pair | A | Dengue virus SLA | C | 84 | A | 85 | A | 86 | * | U | 46 | G | 47 | G | 48 | ncWW | ncWW | cWW |
| 5 | IL_8P9A_384 | 8P9A | 0.1743 | 0 | Isolated non-canonical cWW contact (H) | sR | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 6 | IL_8P9A_408 | 8P9A | 0.1477 | 0 | Isolated non-canonical cWW pair (H) | sR | SSU rRNA | C | 686 | G | 687 | G | 688 | * | C | 646 | G | 647 | G | 648 | cWW | cWW | |
| 7 | IL_1SI2_002 | 1SI2 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 8 | IL_1SI3_001 | 1SI3 | 0.0849 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 9 | IL_4J50_002 | 4J50 | 0.1453 | 0 | Isolated non-canonical cWW pair | A+B | RNA (19-mer) | C | 10 | A | 11 | G | 12 | * | C | 10 | A | 11 | G | 12 | cWW | cWW | |
| 10 | IL_7VFT_003 | 7VFT | 0.1643 | 0 | Isolated non-canonical cWW pair | A | RNA (23-mer) | C | 11 | A | 12 | G | 13 | * | C | 11||||12_555 | A | 12||||12_555 | G | 13||||12_555 | cWW | cWW | |
| 11 | IL_8C3A_474 | 8C3A | 0.1818 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | U | 1637 | A | 1638 | C | 1639 | * | G | 1735 | A | 1736 | A | 1737 | cWW | ncWw | cWW |
| 12 | IL_8AF0_004 | 8AF0 | 0.2784 | 0 | Isolated non-canonical cWW pair | C+D | RNA (19-mer) | A | 37 | C | 38 | G | 39 | * | C | 31 | C | 32 | U | 33 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UGA | 2 |
| UGA*UGA | 2 |
| CAG*CAG | 2 |
| CGU*GAG | 1 |
| CAA*UGG | 1 |
| UGU*AGA | 1 |
| CGG*CGG | 1 |
| UAC*GAA | 1 |
| ACG*CCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 6 |
| A*A | 3 |
| G*A | 1 |
| A*G | 1 |
| C*C | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (6)
- Isolated non-canonical cWW contact (4)
- Isolated non-canonical cWW contact (H) (1)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.20 | Max 0.38
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