Motif IL_63797.1 Version IL_63797.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3TZR_001 | 3TZR | 0.0000 | 4 | Major groove intercalation | A+B | RNA (20-mer) + RNA (16-mer) | G | 52 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | ncWS | cWW |
| 2 | IL_5TBW_374 | 5TBW | 0.4266 | 1 | Minor groove platform | AS | 5S rRNA | G | 49 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 1 |
| GUAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 1 |
| UA* | 1 |
- Annotations
-
- Major groove intercalation (1)
- Minor groove platform (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.43 | Avg 0.21 | Max 0.43
Coloring options: