Motif IL_63797.2 Version IL_63797.2 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_145 | 8C3A | 0.1040 | 1 | 3 | 5S rRNA | G | 49 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |
2 | IL_5TBW_374 | 5TBW | 0.0000 | 1 | Minor groove platform | AS | 5S rRNA | G | 49 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW |
3 | IL_3TZR_001 | 3TZR | 0.4266 | 4 | Major groove outside cWW, minor groove, intercalation pocket | A+B | RNA (20-mer) + RNA (16-mer) | G | 52 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUAG*CC | 2 |
GAACUAC*GC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UA* | 2 |
AACUA* | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove outside cWW, minor groove, intercalation pocket (1)
- Minor groove platform (1)
- (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.21 | Max 0.43
Coloring options: