#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_8C3A_1458C3A0.104013 5S rRNAG49A51G52*C28C29cWWcWScWW
2 IL_5TBW_3745TBW0.00001Minor groove platformAS 5S rRNAG49A51G52*C28C29cWWcWScWW
3 IL_3TZR_0013TZR0.42664Major groove outside cWW, minor groove, intercalation pocketA+BRNA (20-mer) + RNA (16-mer)G52A57C58*G110C111cWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAG*CC2
GAACUAC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
UA*2
AACUA*1

Release history

Release3.803.813.823.833.843.853.863.873.88
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • Minor groove platform (1)
  • (1)
  • Basepair signature
    cWW-cWS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.21 | Max 0.43
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