Motif IL_64239.1 Version IL_64239.1 of this group appears in releases 3.15 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_469 | 4V88 | 0.6201 | 1 | Single bulged U | A6 | SSU rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
| 2 | IL_1KXK_001 | 1KXK | 0.0000 | 2 | A | ai5g group II Self-splicing intron | U | 8 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
| 3 | IL_5J7L_331 | 5J7L | 0.3788 | 1 | Single bulged U | DA | LSU rRNA | U | 2202 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UA*UUG | 1 |
| UAUC*GG | 1 |
| UUG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 1 |
| AU* | 1 |
| U* | 1 |
- Annotations
-
- Single bulged U (2)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.38 | Avg 0.39 | Max 0.76
Coloring options: