#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_5ZTM_0015ZTM0.32650Other ILCnon-coding mRNA sequence roX2U118A119G120*C162C163G164cWWncWWcWW
2 IL_6IA2_0036IA20.16530Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
3 IL_4KQ0_0054KQ00.13220Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
4 IL_4KQ0_0014KQ00.13320Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
5 IL_4J50_0034J500.16200Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
6 IL_4J50_0014J500.16200Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
7 IL_3R1D_0033R1D0.12600Isolated cWH basepairB+ARNA (11-mer)C2||AGRB3G4*C8G9G10cWWcHWcWW
8 IL_4E5C_0014E5C0.10530Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
9 IL_4KQ0_0034KQ00.11440Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
10 IL_3SJ2_0013SJ20.07400Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
11 IL_3SJ2_0023SJ20.06150Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
12 IL_3R1C_0173R1C0.06250Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
13 IL_3R1C_0113R1C0.05540Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
14 IL_3R1C_0123R1C0.06290Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
15 IL_3R1C_0183R1C0.06400Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
16 IL_3SJ2_0033SJ20.06140Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
17 IL_3CZW_0023CZW0.00030Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
18 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
19 IL_3W3S_0033W3S0.08080Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
20 IL_2R1S_0022R1S0.09220Isolated cWH basepairB+ARNA (13-mer)5BU19G20A21*5BU6G7A8cWWcHWcWW
21 IL_6RA4_0026RA40.15910Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
22 IL_4KQ0_0044KQ00.15100Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
23 IL_4KQ0_0024KQ00.15000Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
24 IL_3D0M_0013D0M0.15720Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
25 IL_3D0M_0023D0M0.15720Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
26 IL_2H1M_0032H1M0.16400Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
27 IL_2H1M_0022H1M0.20210Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
28 IL_5J7L_0115J7L0.15640Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
29 IL_4WF9_0454WF90.18360Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
30 IL_3R1D_0023R1D0.15710Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
31 IL_406D_005406D0.18900Isolated cWH basepairA+ERNA (17-mer)U8||CG9||CG10||C*U25||CG26||CG27||CcWWncHWcWW
32 IL_406D_002406D0.20640Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG15
UGA*UGA5
CAG*CAG2
AGU*AAU2
CGC*GGG2
UGG*UGG2
UAG*CCG1
C(GRB)G*CGG1
GGU*AGC1
(5BU)GA*(5BU)GA1
Non-Watson-Crick part of the motif
SequenceCounts
G*G26
A*A2
G*A2
A*C1
(GRB)*G1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (31)
  • Other IL (1)
  • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.17 | Max 0.62
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