Motif IL_66171.1 Version IL_66171.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5ZTM_001 | 5ZTM | 0.3265 | 0 | Other IL | C | non-coding mRNA sequence roX2 | U | 118 | A | 119 | G | 120 | * | C | 162 | C | 163 | G | 164 | cWW | ncWW | cWW |
2 | IL_6IA2_003 | 6IA2 | 0.1653 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 9 | G | 10||A | G | 11 | * | C | 9 | G | 10||A | G | 11||A | cWW | cHW | cWW |
3 | IL_4KQ0_005 | 4KQ0 | 0.1322 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 3 | G | 4 | G | 5 | * | C | 15 | G | 16 | G | 17 | cWW | cHW | cWW |
4 | IL_4KQ0_001 | 4KQ0 | 0.1332 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 3 | G | 4 | G | 5 | * | C | 15 | G | 16 | G | 17 | cWW | cHW | cWW |
5 | IL_4J50_003 | 4J50 | 0.1620 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 13 | A | 14 | G | 15 | * | C | 7 | A | 8 | G | 9 | cWW | cWW | |
6 | IL_4J50_001 | 4J50 | 0.1620 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 13 | A | 14 | G | 15 | * | C | 7 | A | 8 | G | 9 | cWW | cWW | |
7 | IL_3R1D_003 | 3R1D | 0.1260 | 0 | Isolated cWH basepair | B+A | RNA (11-mer) | C | 2||A | GRB | 3 | G | 4 | * | C | 8 | G | 9 | G | 10 | cWW | cHW | cWW |
8 | IL_4E5C_001 | 4E5C | 0.1053 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cHW | cWW |
9 | IL_4KQ0_003 | 4KQ0 | 0.1144 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cHW | cWW |
10 | IL_3SJ2_001 | 3SJ2 | 0.0740 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 7 | G | 8 | G | 9 | * | C | 13 | G | 14 | G | 15 | cWW | cHW | cWW |
11 | IL_3SJ2_002 | 3SJ2 | 0.0615 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 10 | G | 11 | G | 12 | * | C | 10 | G | 11 | G | 12 | cWW | cHW | cWW |
12 | IL_3R1C_017 | 3R1C | 0.0625 | 0 | Isolated cWH basepair | R+Q | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
13 | IL_3R1C_011 | 3R1C | 0.0554 | 0 | Isolated cWH basepair | K+L | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
14 | IL_3R1C_012 | 3R1C | 0.0629 | 0 | Isolated cWH basepair | L+K | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
15 | IL_3R1C_018 | 3R1C | 0.0640 | 0 | Isolated cWH basepair | Q+R | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
16 | IL_3SJ2_003 | 3SJ2 | 0.0614 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 7 | G | 8 | G | 9 | * | C | 13 | G | 14 | G | 15 | cWW | cHW | cWW |
17 | IL_3CZW_002 | 3CZW | 0.0003 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | * | U | 10 | G | 11 | A | 12 | cWW | cHW | cWW |
18 | IL_3CZW_001 | 3CZW | 0.0000 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7 | G | 8 | A | 9 | * | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | cWW | cHW | cWW |
19 | IL_3W3S_003 | 3W3S | 0.0808 | 0 | Isolated cWH basepair | B | Selenocysteine transfer RNA | G | 47|||A | G | 47|||B | U | 47|||C | * | A | 47|||N | G | 47|||O | C | 47|||P | cWW | cHW | cWW |
20 | IL_2R1S_002 | 2R1S | 0.0922 | 0 | Isolated cWH basepair | B+A | RNA (13-mer) | 5BU | 19 | G | 20 | A | 21 | * | 5BU | 6 | G | 7 | A | 8 | cWW | cHW | cWW |
21 | IL_6RA4_002 | 6RA4 | 0.1591 | 0 | Isolated cWH basepair | L+M | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403 | G | 404 | A | 405 | cWW | cHW | cWW |
22 | IL_4KQ0_004 | 4KQ0 | 0.1510 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 6 | G | 7 | G | 8 | * | C | 12 | G | 13 | G | 14 | cWW | cHW | cWW |
23 | IL_4KQ0_002 | 4KQ0 | 0.1500 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 6 | G | 7 | G | 8 | * | C | 12 | G | 13 | G | 14 | cWW | cHW | cWW |
24 | IL_3D0M_001 | 3D0M | 0.1572 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7 | G | 8 | A | 9 | * | U | 10||||16_545 | G | 11||||16_545 | A | 12||||16_545 | cWW | cHW | ncWW |
25 | IL_3D0M_002 | 3D0M | 0.1572 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7||||16_545 | G | 8||||16_545 | A | 9||||16_545 | * | U | 10 | G | 11 | A | 12 | cWW | cHW | ncWW |
26 | IL_2H1M_003 | 2H1M | 0.1640 | 0 | Isolated cWH basepair | B+A | RNA (16-mer) | A | 21 | G | 22 | U | 23 | * | A | 10 | A | 11 | U | 12 | cWW | ncHW | cWW |
27 | IL_2H1M_002 | 2H1M | 0.2021 | 0 | Isolated cWH basepair | A+B | RNA (16-mer) | A | 5 | G | 6 | U | 7 | * | A | 26 | A | 27 | U | 28 | cWW | ncHW | cWW |
28 | IL_5J7L_011 | 5J7L | 0.1564 | 0 | Isolated cWH basepair | AA | SSU rRNA | C | 176 | G | 177 | C | 178 | * | G | 144 | G | 145 | G | 146 | cWW | cHW | cWW |
29 | IL_4WF9_045 | 4WF9 | 0.1836 | 0 | Isolated cWH basepair | X | LSU rRNA | C | 1277 | G | 1278 | C | 1279 | * | G | 1243 | G | 1244 | G | 1245 | cWW | cHW | cWW |
30 | IL_3R1D_002 | 3R1D | 0.1571 | 0 | Isolated cWH basepair | A+B | RNA (11-mer) | C | 5 | G | 6 | G | 7 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
31 | IL_406D_005 | 406D | 0.1890 | 0 | Isolated cWH basepair | A+E | RNA (17-mer) | U | 8||C | G | 9||C | G | 10||C | * | U | 25||C | G | 26||C | G | 27||C | cWW | ncHW | cWW |
32 | IL_406D_002 | 406D | 0.2064 | 0 | Isolated cWH basepair | E+A | RNA (17-mer) | U | 25||A | G | 26||A | G | 27||A | * | U | 8||A | G | 9||A | G | 10||A | cWW | ncHW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGG*CGG | 15 |
UGA*UGA | 5 |
CAG*CAG | 2 |
AGU*AAU | 2 |
CGC*GGG | 2 |
UGG*UGG | 2 |
UAG*CCG | 1 |
C(GRB)G*CGG | 1 |
GGU*AGC | 1 |
(5BU)GA*(5BU)GA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*G | 26 |
A*A | 2 |
G*A | 2 |
A*C | 1 |
(GRB)*G | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWH basepair (31)
- Other IL (1)
- Basepair signature
- cWW-cHW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.17 | Max 0.62
Coloring options: