Motif IL_66414.3 Version IL_66414.3 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 6-10 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_001 | 4V9F | 0.1349 | 0 | Triple sheared with non-canonical cWW | 0 | LSU rRNA | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | * | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | cWW | cwW | tSH | tHS | tHS | cWW | ||
| 2 | IL_5TBW_015 | 5TBW | 0.1208 | 0 | Triple sheared with non-canonical cWW | 1+4 | LSU rRNA + 5.8S rRNA | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | * | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | ntSH | tHS | tHS | ntHS | ncWS | cWW |
| 3 | IL_4Y4O_179 | 4Y4O | 0.0604 | 0 | Triple sheared with non-canonical cWW (H) | 2A | LSU rRNA | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | ntSH | tHS | tHS | ntHS | cWW | |
| 4 | IL_5J7L_245 | 5J7L | 0.0000 | 0 | Triple sheared with non-canonical cWW | DA | LSU rRNA | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW | |
| 5 | IL_4WF9_001 | 4WF9 | 0.0565 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | C | 555 | U | 556 | G | 557 | A | 558 | A | 559 | A | 560 | C | 561 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW | |
| 6 | IL_4IOA_001 | 4IOA | 0.0790 | 0 | Triple sheared with non-canonical cWW (H) | X | LSU rRNA | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAC*GUGGAUG | 4 |
| AUGAAAU*GUGGAUU | 1 |
| GUGAAAU*ACGGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAA*UGGAU | 5 |
| UGAAA*CGGAU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared with non-canonical cWW (4)
- Triple sheared with non-canonical cWW (H) (2)
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.09 | Max 0.16
Coloring options: