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Motif IL_66578.1 Version IL_66578.1 of this group appears in releases 3.88 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_1NTA_0011NTA0.21591Stack outside cWWB+ARNA (18-mer)G114G115*C5C7cWWcWW
2 IL_5LYS_0065LYS0.12392Stack outside cWWB7SK RNAC36C37*G70G73cWWcWW
3 IL_4KZD_0064KZD0.00002Stack outside cWWRRNA (84-MER)C30C31*G49G52cWWcWW
4 IL_7L0Z_0047L0Z0.11502Stack outside cWWGRNA (69-MER)C23C24*G41G44cWWcWW
5 IL_1U9S_0081U9S0.17691Stack outside cWWARIBONUCLEASE PG195C196*G217C219cWWcWW
6 IL_1R3E_0011R3E0.23543Multiple bulged basesE+DRNA (17-mer)C415C416*G408G412cWWcWW
7 IL_7OAX_0017OAX0.34981Stack outside cWWAChili RNA AptamerC44G45*U8G10cWWcWW
8 IL_6CZR_1196CZR0.33142Minor groove platform1a SSU rRNAG227G228*U123C126cWWcWW
9 IL_4LFB_0074LFB0.25822Minor groove platformA SSU rRNAG231G232*U129C131cWWcWW
10 IL_6JQ5_0046JQ50.49801BHatchet ribozymeG31G32*U62C64cWWcWW
11 IL_7A0S_0677A0S0.43672Major groove intercalationX LSU rRNAU1833G1834*U1881A1884cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GUUG2
GG*UGAC2
GG*CGC1
CC*GCUG1
GC*GGC1
CC*GUUCG1
CG*UGG1
GG*UGC1
UG*UGAA1
Non-Watson-Crick part of the motif
SequenceCounts
*G4
*GA3
*UU2
*CU1
*UUC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Stack outside cWW (6)
  • Minor groove platform (2)
  • Multiple bulged bases (1)
  • (1)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.12 | Avg 0.32 | Max 0.89
    Help

    Coloring options:

    IL_1NTA_001:IL_1NTA_001 = 0IL_1NTA_001:IL_5LYS_006 = 0.2565IL_1NTA_001:IL_4KZD_006 = 0.2159IL_1NTA_001:IL_7L0Z_004 = 0.2507IL_1NTA_001:IL_1U9S_008 = 0.3036IL_1NTA_001:IL_1R3E_001 = 0.2723IL_1NTA_001:IL_7OAX_001 = 0.3967IL_1NTA_001:IL_6CZR_119 = 0.4601IL_1NTA_001:IL_4LFB_007 = 0.3727IL_1NTA_001:IL_6JQ5_004 = 0.8745IL_1NTA_001:IL_7A0S_067 = 0.5922IL_5LYS_006:IL_1NTA_001 = 0.2565IL_5LYS_006:IL_5LYS_006 = 0IL_5LYS_006:IL_4KZD_006 = 0.1239IL_5LYS_006:IL_7L0Z_004 = 0.1877IL_5LYS_006:IL_1U9S_008 = 0.2341IL_5LYS_006:IL_1R3E_001 = 0.3101IL_5LYS_006:IL_7OAX_001 = 0.3127IL_5LYS_006:IL_6CZR_119 = 0.3016IL_5LYS_006:IL_4LFB_007 = 0.2503IL_5LYS_006:IL_6JQ5_004 = 0.4801IL_5LYS_006:IL_7A0S_067 = 0.4389IL_4KZD_006:IL_1NTA_001 = 0.2159IL_4KZD_006:IL_5LYS_006 = 0.1239IL_4KZD_006:IL_4KZD_006 = 0IL_4KZD_006:IL_7L0Z_004 = 0.115IL_4KZD_006:IL_1U9S_008 = 0.1769IL_4KZD_006:IL_1R3E_001 = 0.2354IL_4KZD_006:IL_7OAX_001 = 0.3498IL_4KZD_006:IL_6CZR_119 = 0.3314IL_4KZD_006:IL_4LFB_007 = 0.2582IL_4KZD_006:IL_6JQ5_004 = 0.498IL_4KZD_006:IL_7A0S_067 = 0.4367IL_7L0Z_004:IL_1NTA_001 = 0.2507IL_7L0Z_004:IL_5LYS_006 = 0.1877IL_7L0Z_004:IL_4KZD_006 = 0.115IL_7L0Z_004:IL_7L0Z_004 = 0IL_7L0Z_004:IL_1U9S_008 = 0.1363IL_7L0Z_004:IL_1R3E_001 = 0.1843IL_7L0Z_004:IL_7OAX_001 = 0.4151IL_7L0Z_004:IL_6CZR_119 = 0.3596IL_7L0Z_004:IL_4LFB_007 = 0.2998IL_7L0Z_004:IL_6JQ5_004 = 0.5027IL_7L0Z_004:IL_7A0S_067 = 0.4521IL_1U9S_008:IL_1NTA_001 = 0.3036IL_1U9S_008:IL_5LYS_006 = 0.2341IL_1U9S_008:IL_4KZD_006 = 0.1769IL_1U9S_008:IL_7L0Z_004 = 0.1363IL_1U9S_008:IL_1U9S_008 = 0IL_1U9S_008:IL_1R3E_001 = 0.1592IL_1U9S_008:IL_7OAX_001 = 0.4416IL_1U9S_008:IL_6CZR_119 = 0.3637IL_1U9S_008:IL_4LFB_007 = 0.3411IL_1U9S_008:IL_6JQ5_004 = 0.5036IL_1U9S_008:IL_7A0S_067 = 0.4338IL_1R3E_001:IL_1NTA_001 = 0.2723IL_1R3E_001:IL_5LYS_006 = 0.3101IL_1R3E_001:IL_4KZD_006 = 0.2354IL_1R3E_001:IL_7L0Z_004 = 0.1843IL_1R3E_001:IL_1U9S_008 = 0.1592IL_1R3E_001:IL_1R3E_001 = 0IL_1R3E_001:IL_7OAX_001 = 0.28IL_1R3E_001:IL_6CZR_119 = 0.3639IL_1R3E_001:IL_4LFB_007 = 0.3616IL_1R3E_001:IL_6JQ5_004 = 0.5357IL_1R3E_001:IL_7A0S_067 = 0.4726IL_7OAX_001:IL_1NTA_001 = 0.3967IL_7OAX_001:IL_5LYS_006 = 0.3127IL_7OAX_001:IL_4KZD_006 = 0.3498IL_7OAX_001:IL_7L0Z_004 = 0.4151IL_7OAX_001:IL_1U9S_008 = 0.4416IL_7OAX_001:IL_1R3E_001 = 0.28IL_7OAX_001:IL_7OAX_001 = 0IL_7OAX_001:IL_6CZR_119 = 0.2293IL_7OAX_001:IL_4LFB_007 = 0.2421IL_7OAX_001:IL_6JQ5_004 = 0.8922IL_7OAX_001:IL_7A0S_067 = 0.6652IL_6CZR_119:IL_1NTA_001 = 0.4601IL_6CZR_119:IL_5LYS_006 = 0.3016IL_6CZR_119:IL_4KZD_006 = 0.3314IL_6CZR_119:IL_7L0Z_004 = 0.3596IL_6CZR_119:IL_1U9S_008 = 0.3637IL_6CZR_119:IL_1R3E_001 = 0.3639IL_6CZR_119:IL_7OAX_001 = 0.2293IL_6CZR_119:IL_6CZR_119 = 0IL_6CZR_119:IL_4LFB_007 = 0.1921IL_6CZR_119:IL_6JQ5_004 = 0.2695IL_6CZR_119:IL_7A0S_067 = 0.2654IL_4LFB_007:IL_1NTA_001 = 0.3727IL_4LFB_007:IL_5LYS_006 = 0.2503IL_4LFB_007:IL_4KZD_006 = 0.2582IL_4LFB_007:IL_7L0Z_004 = 0.2998IL_4LFB_007:IL_1U9S_008 = 0.3411IL_4LFB_007:IL_1R3E_001 = 0.3616IL_4LFB_007:IL_7OAX_001 = 0.2421IL_4LFB_007:IL_6CZR_119 = 0.1921IL_4LFB_007:IL_4LFB_007 = 0IL_4LFB_007:IL_6JQ5_004 = 0.2677IL_4LFB_007:IL_7A0S_067 = 0.2696IL_6JQ5_004:IL_1NTA_001 = 0.8745IL_6JQ5_004:IL_5LYS_006 = 0.4801IL_6JQ5_004:IL_4KZD_006 = 0.498IL_6JQ5_004:IL_7L0Z_004 = 0.5027IL_6JQ5_004:IL_1U9S_008 = 0.5036IL_6JQ5_004:IL_1R3E_001 = 0.5357IL_6JQ5_004:IL_7OAX_001 = 0.8922IL_6JQ5_004:IL_6CZR_119 = 0.2695IL_6JQ5_004:IL_4LFB_007 = 0.2677IL_6JQ5_004:IL_6JQ5_004 = 0IL_6JQ5_004:IL_7A0S_067 = 0.2786IL_7A0S_067:IL_1NTA_001 = 0.5922IL_7A0S_067:IL_5LYS_006 = 0.4389IL_7A0S_067:IL_4KZD_006 = 0.4367IL_7A0S_067:IL_7L0Z_004 = 0.4521IL_7A0S_067:IL_1U9S_008 = 0.4338IL_7A0S_067:IL_1R3E_001 = 0.4726IL_7A0S_067:IL_7OAX_001 = 0.6652IL_7A0S_067:IL_6CZR_119 = 0.2654IL_7A0S_067:IL_4LFB_007 = 0.2696IL_7A0S_067:IL_6JQ5_004 = 0.2786IL_7A0S_067:IL_7A0S_067 = 0IL_1NTA_001IL_5LYS_006IL_4KZD_006IL_7L0Z_004IL_1U9S_008IL_1R3E_001IL_7OAX_001IL_6CZR_119IL_4LFB_007IL_6JQ5_004IL_7A0S_067Discrepancy0.000.200.400.600.80
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