Motif IL_66578.1 Version IL_66578.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NTA_001 | 1NTA | 0.2159 | 1 | Stack outside cWW | B+A | RNA (18-mer) | G | 114 | G | 115 | * | C | 5 | C | 7 | cWW | cWW |
| 2 | IL_5LYS_006 | 5LYS | 0.1239 | 2 | Major groove platform outside cWW | B | 7SK RNA | C | 36 | C | 37 | * | G | 70 | G | 73 | cWW | cWW |
| 3 | IL_4KZD_006 | 4KZD | 0.0000 | 2 | Major groove platform outside cWW | R | RNA (84-MER) | C | 30 | C | 31 | * | G | 49 | G | 52 | cWW | cWW |
| 4 | IL_7L0Z_004 | 7L0Z | 0.1150 | 2 | G | RNA (69-MER) | C | 23 | C | 24 | * | G | 41 | G | 44 | cWW | cWW | |
| 5 | IL_1U9S_008 | 1U9S | 0.1769 | 1 | Stack outside cWW | A | RIBONUCLEASE P | G | 195 | C | 196 | * | G | 217 | C | 219 | cWW | cWW |
| 6 | IL_1R3E_001 | 1R3E | 0.2354 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | C | 415 | C | 416 | * | G | 408 | G | 412 | cWW | cWW |
| 7 | IL_7OAX_001 | 7OAX | 0.3498 | 1 | A | Chili RNA Aptamer | C | 44 | G | 45 | * | U | 8 | G | 10 | cWW | cWW | |
| 8 | IL_6CZR_119 | 6CZR | 0.3314 | 2 | Multiple bulged bases | 1a | SSU rRNA | G | 227 | G | 228 | * | U | 123 | C | 126 | cWW | cWW |
| 9 | IL_4LFB_007 | 4LFB | 0.2582 | 2 | Multiple bulged bases | A | SSU rRNA | G | 231 | G | 232 | * | U | 129 | C | 131 | cWW | cWW |
| 10 | IL_6JQ5_004 | 6JQ5 | 0.4980 | 1 | Multiple bulged bases | B | RNA (82-MER) | G | 31 | G | 32 | * | U | 62 | C | 64 | cWW | cWW |
| 11 | IL_7A0S_067 | 7A0S | 0.4367 | 2 | Major groove outside cWW, minor groove, intercalation pocket | X | LSU rRNA | U | 1833 | G | 1834 | * | U | 1881 | A | 1884 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GUUG | 2 |
| GG*UGAC | 2 |
| GG*CGC | 1 |
| CC*GCUG | 1 |
| GC*GGC | 1 |
| CC*GUUCG | 1 |
| CG*UGG | 1 |
| GG*UGC | 1 |
| UG*UGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 4 |
| *GA | 3 |
| *UU | 2 |
| *CU | 1 |
| *UUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (4)
- Stack outside cWW (2)
- Major groove platform outside cWW (2)
- (2)
- Major groove outside cWW, minor groove, intercalation pocket (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.12 | Avg 0.32 | Max 0.89
Coloring options: