RNA 3D Hub //

Motif IL_67701.1 Version IL_67701.1 of this group appears in releases 3.89 to 3.90

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-72-62-73-53-64-5
1 IL_4QIK_0014QIK0.41640D+CRNA (23-mer)U11G12U13G14*C10U11G12cWWcWwcWW
2 IL_4N0T_0044N0T0.00000BU6 snRNAG78A79U80G81*C66C67C68cWWncWWcWWcWW
3 IL_8C3A_4198C3A0.35230CM SSU rRNAG495G496U497C498*G485G486C487cWWncWwncWWncSWcWW
4 IL_7KJT_0027KJT0.36250A tRNAC39C40A41G42*C28U29G30ncWWcWW
5 IL_6ZDU_0016ZDU0.47920CChains: C,DA1283U1284A1285G1286*C1268U1269U1270ncWWcWW
6 IL_4PHY_0034PHY0.65091A+BRNA (26-MER) + RNA (20-mer)G17A18U19C20*G31A33C34cWWcWwncWW
7 IL_7MLW_0077MLW0.74251FGuanidine-I riboswitchG89A90A91A92*U73G75C76cWWcWWcWW
8 IL_6VMY_0016VMY0.60930ACobalamin riboswitchU219C220C221G222*C230A231G232cWWntWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGUG*CUG1
GAUG*CCC1
GGUC*GGC1
CCAG*CUG1
AUAG*CUU1
GAUC*GAAC1
GAAA*UCGC1
UCCG*CAG1
Non-Watson-Crick part of the motif
SequenceCounts
GU*U1
AU*C1
GU*G1
CA*U1
UA*U1
AU*AA1
AA*CG1
CC*A1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusNew id, > 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
    • Basepair signature
    cWW-L-R-L-cWW
    Heat map statistics
    Min 0.35 | Avg 0.54 | Max 0.89
    Help

    Coloring options:

    IL_4QIK_001:IL_4QIK_001 = 0IL_4QIK_001:IL_4N0T_004 = 0.4164IL_4QIK_001:IL_8C3A_419 = 0.5655IL_4QIK_001:IL_7KJT_002 = 0.4589IL_4QIK_001:IL_6ZDU_001 = 0.5583IL_4QIK_001:IL_4PHY_003 = 0.741IL_4QIK_001:IL_7MLW_007 = 0.8892IL_4QIK_001:IL_6VMY_001 = 0.8295IL_4N0T_004:IL_4QIK_001 = 0.4164IL_4N0T_004:IL_4N0T_004 = 0IL_4N0T_004:IL_8C3A_419 = 0.3523IL_4N0T_004:IL_7KJT_002 = 0.3625IL_4N0T_004:IL_6ZDU_001 = 0.4792IL_4N0T_004:IL_4PHY_003 = 0.6509IL_4N0T_004:IL_7MLW_007 = 0.7425IL_4N0T_004:IL_6VMY_001 = 0.6093IL_8C3A_419:IL_4QIK_001 = 0.5655IL_8C3A_419:IL_4N0T_004 = 0.3523IL_8C3A_419:IL_8C3A_419 = 0IL_8C3A_419:IL_7KJT_002 = 0.3675IL_8C3A_419:IL_6ZDU_001 = 0.4903IL_8C3A_419:IL_4PHY_003 = 0.6956IL_8C3A_419:IL_7MLW_007 = 0.8261IL_8C3A_419:IL_6VMY_001 = 0.7731IL_7KJT_002:IL_4QIK_001 = 0.4589IL_7KJT_002:IL_4N0T_004 = 0.3625IL_7KJT_002:IL_8C3A_419 = 0.3675IL_7KJT_002:IL_7KJT_002 = 0IL_7KJT_002:IL_6ZDU_001 = 0.3607IL_7KJT_002:IL_4PHY_003 = 0.6459IL_7KJT_002:IL_7MLW_007 = 0.7462IL_7KJT_002:IL_6VMY_001 = 0.7572IL_6ZDU_001:IL_4QIK_001 = 0.5583IL_6ZDU_001:IL_4N0T_004 = 0.4792IL_6ZDU_001:IL_8C3A_419 = 0.4903IL_6ZDU_001:IL_7KJT_002 = 0.3607IL_6ZDU_001:IL_6ZDU_001 = 0IL_6ZDU_001:IL_4PHY_003 = 0.711IL_6ZDU_001:IL_7MLW_007 = 0.8504IL_6ZDU_001:IL_6VMY_001 = 0.8194IL_4PHY_003:IL_4QIK_001 = 0.741IL_4PHY_003:IL_4N0T_004 = 0.6509IL_4PHY_003:IL_8C3A_419 = 0.6956IL_4PHY_003:IL_7KJT_002 = 0.6459IL_4PHY_003:IL_6ZDU_001 = 0.711IL_4PHY_003:IL_4PHY_003 = 0IL_4PHY_003:IL_7MLW_007 = 0.3812IL_4PHY_003:IL_6VMY_001 = 0.6958IL_7MLW_007:IL_4QIK_001 = 0.8892IL_7MLW_007:IL_4N0T_004 = 0.7425IL_7MLW_007:IL_8C3A_419 = 0.8261IL_7MLW_007:IL_7KJT_002 = 0.7462IL_7MLW_007:IL_6ZDU_001 = 0.8504IL_7MLW_007:IL_4PHY_003 = 0.3812IL_7MLW_007:IL_7MLW_007 = 0IL_7MLW_007:IL_6VMY_001 = 0.5335IL_6VMY_001:IL_4QIK_001 = 0.8295IL_6VMY_001:IL_4N0T_004 = 0.6093IL_6VMY_001:IL_8C3A_419 = 0.7731IL_6VMY_001:IL_7KJT_002 = 0.7572IL_6VMY_001:IL_6ZDU_001 = 0.8194IL_6VMY_001:IL_4PHY_003 = 0.6958IL_6VMY_001:IL_7MLW_007 = 0.5335IL_6VMY_001:IL_6VMY_001 = 0IL_4QIK_001IL_4N0T_004IL_8C3A_419IL_7KJT_002IL_6ZDU_001IL_4PHY_003IL_7MLW_007IL_6VMY_001Discrepancy0.000.200.400.600.80
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