Motif IL_67877.1 Version IL_67877.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-4 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1NTA_005 | 1NTA | 0.3507 | 5 | A+B | RNA (22-mer) + RNA (18-mer) | C | 5 | G | 6 | C | 7 | G | 13 | * | C | 113 | G | 114 | G | 115 | cWW | cWH | cWW | cWW |
2 | IL_6CK5_011 | 6CK5 | 0.0000 | 2 | A | Guanidine-I riboswitch | U | 36 | G | 37 | U | 39 | G | 41 | * | C | 21 | A | 22 | G | 23 | cWW | cWH | cWW | cWW |
3 | IL_4RUM_002 | 4RUM | 0.4466 | 1 | A | NiCo riboswitch RNA | U | 38 | G | 39 | C | 40 | G | 42 | * | C | 20 | A | 21 | A | 22 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCAUUUGG*CGG | 1 |
UGUUCG*CAG | 1 |
UGCAG*CAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCAUUUG*G | 1 |
GUUC*A | 1 |
GCA*A | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWH-cWW-cWW
- Heat map statistics
- Min 0.35 | Avg 0.39 | Max 0.94
Coloring options: