Motif IL_68668.1 Version IL_68668.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4NVV_057 | 4NVV | 0.5090 | 0 | A | 23S Ribosomal RNA | G | 1495 | A | 1496 | G | 1497 | * | C | 1509 | C | 1510 | cWW | ncWW | cWW |
| 2 | IL_3U5H_107 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | |
| 3 | IL_4CUV_111 | 4CUV | 0.1894 | 1 | 1 | 25S RRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCC*GC | 2 |
| GAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC* | 2 |
| A* | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68668.1 | Only in the parent motif |
|---|---|---|---|
| IL_68767.1 Compare | IL_3U5H_107 | IL_4CUV_111, IL_4NVV_057 | |
| IL_67887.2 Compare | IL_4NVV_057 | IL_3U5H_107, IL_4CUV_111 | IL_4FAW_005, IL_3RW6_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_68668.1 | Only in the child motif |
|---|---|---|---|
| IL_15884.1 Compare | IL_3U5H_107 | IL_4CUV_111, IL_4NVV_057 | |
| IL_94430.8 Compare | IL_4CUV_111 | IL_3U5H_107, IL_4NVV_057 | IL_4QCN_054, IL_2QBG_072, IL_4CUV_152, IL_4QCN_067, IL_4IOA_066, IL_4IOA_106, IL_3Q1Q_003, IL_4TS2_002, IL_2AW7_007, IL_2XXA_013, IL_1S72_066, IL_4A1B_086, IL_4BPP_040, IL_3U5H_145 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.19 | Avg 0.27 | Max 0.53
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